Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47290 * 2 1 4 4 C 1.46901 * 110.99776 * 292.73444 * 3 2 1 5 5 C 1.50705 * 109.47351 * 296.94605 * 4 3 2 6 6 H 1.08004 * 119.99493 * 4.65518 * 5 4 3 7 7 C 1.37869 * 120.00019 * 184.65594 * 5 4 3 8 8 N 1.31514 * 119.99991 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00144 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46817 * 90.00483 * 9 7 5 11 11 H 1.48501 * 109.47019 * 210.00156 * 9 7 5 12 12 H 1.48499 * 109.47056 * 330.00276 * 9 7 5 13 13 C 1.46900 * 110.99978 * 168.78477 * 3 2 1 14 14 H 1.08995 * 109.50469 * 64.02638 * 13 3 2 15 15 C 1.53124 * 109.49987 * 303.94709 * 13 3 2 16 16 C 1.53120 * 109.15619 * 182.40758 * 15 13 3 17 17 C 1.53029 * 109.28290 * 57.65770 * 16 15 13 18 18 N 1.46846 * 109.51463 * 300.82879 * 17 16 15 19 19 C 1.46829 * 111.21361 * 61.74050 * 18 17 16 20 20 H 1.09003 * 109.47329 * 178.50199 * 1 2 3 21 21 H 1.08990 * 109.47302 * 298.50361 * 1 2 3 22 22 H 1.09004 * 109.46719 * 58.50400 * 1 2 3 23 23 H 1.09002 * 109.47251 * 239.99222 * 2 1 3 24 24 H 1.09002 * 109.46582 * 119.99712 * 2 1 3 25 25 H 1.09002 * 109.46968 * 56.94372 * 4 3 2 26 26 H 1.09000 * 109.47265 * 176.94710 * 4 3 2 27 27 H 0.97001 * 120.00301 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.52037 * 62.50768 * 15 13 3 29 29 H 1.08993 * 109.57789 * 302.34696 * 15 13 3 30 30 H 1.09007 * 109.50148 * 297.71241 * 16 15 13 31 31 H 1.09004 * 109.50274 * 177.60043 * 16 15 13 32 32 H 1.09009 * 109.46166 * 60.83381 * 17 16 15 33 33 H 1.08997 * 109.46658 * 180.81087 * 17 16 15 34 34 H 1.00905 * 111.00266 * 185.83671 * 18 17 16 35 35 H 1.08999 * 109.46392 * 178.23482 * 19 18 17 36 36 H 1.09001 * 109.45903 * 58.26875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6955 2.0579 -1.2649 5 6 2.4015 1.3617 -2.3998 6 1 2.9673 0.4610 -2.2122 7 6 2.3251 1.8744 -3.6773 8 7 2.9408 1.2665 -4.6677 9 14 1.3458 3.4318 -4.0017 10 1 2.2309 4.6141 -3.8473 11 1 0.8034 3.3966 -5.3837 12 1 0.2247 3.5225 -3.0321 13 6 3.4635 1.4328 0.2667 14 1 3.9996 0.9360 -0.5418 15 6 3.7626 0.7232 1.5902 16 6 5.2603 0.8299 1.8904 17 6 5.6622 2.3057 1.9381 18 7 5.3564 2.9394 0.6492 19 6 3.9173 2.8912 0.3616 20 1 -0.3634 -1.0273 -0.0269 21 1 -0.3633 0.4904 0.9030 22 1 -0.3633 0.5369 -0.8763 23 1 1.8934 -0.5140 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 0.6187 2.0217 -1.4301 26 1 2.0210 3.0971 -1.2175 27 1 2.8874 1.6274 -5.5665 28 1 3.4806 -0.3268 1.5124 29 1 3.1956 1.1940 2.3933 30 1 5.8252 0.3240 1.1074 31 1 5.4728 0.3636 2.8524 32 1 5.1069 2.8079 2.7305 33 1 6.7308 2.3849 2.1374 34 1 5.6988 3.8882 0.6224 35 1 3.7189 3.3957 -0.5840 36 1 3.3703 3.3906 1.1613 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082500755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = 1.434083 kcal Electronic energy + Delta-G solvation = -15175.716998 eV Core-core repulsion = 12887.466259 eV Total energy + Delta-G solvation = -2288.250739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.77743 -35.99066 -32.48164 -31.46799 -30.67730 -28.73326 -26.24964 -23.82641 -22.48931 -21.65169 -19.83915 -18.83031 -16.72725 -16.48311 -14.67740 -14.51975 -14.31751 -13.89568 -13.81582 -13.35230 -12.98737 -12.48449 -12.42315 -12.15412 -11.73500 -11.34840 -11.09458 -10.80711 -10.71008 -10.55414 -10.45465 -10.18096 -9.98211 -9.81116 -9.58263 -9.30163 -8.53724 -8.06648 -7.11981 -6.05783 -4.04233 3.28830 3.36812 3.40284 4.42037 4.46190 5.01997 5.21200 5.27955 5.32084 5.38241 5.68604 5.78556 5.87471 5.98389 6.07040 6.08410 6.15267 6.17829 6.26546 6.40906 6.48181 6.53946 6.72525 6.79011 6.88900 6.98379 7.02624 7.18372 7.38375 7.64088 7.72634 8.13532 8.19836 8.50118 8.97468 9.57304 11.07436 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.011240 C = 0.009296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.607432 B = 2490.457732 C = 3011.295847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.150 3.850 5 C -0.543 4.543 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.095 3.905 14 H 0.063 0.937 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.060 3.940 18 N -0.688 5.688 19 C 0.071 3.929 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.024 0.976 27 H 0.262 0.738 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.338 0.662 35 H 0.082 0.918 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 1.371 12.043 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 N -0.258 5.258 4 C 0.023 3.977 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.014 4.014 14 H 0.081 0.919 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.070 4.070 18 N -0.320 5.320 19 C -0.058 4.058 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.131 1.067 11.867 11.968 hybrid contribution -0.373 1.074 -0.487 1.237 sum 0.758 2.142 11.380 11.604 Atomic orbital electron populations 1.21712 0.96189 1.00181 1.01796 1.21967 0.95062 0.90603 1.00134 1.62469 1.12745 1.15335 1.35210 1.20238 0.96666 0.94459 0.86329 1.21630 1.32242 1.12283 0.92033 0.90767 1.24941 0.94958 0.96893 0.96179 1.69927 1.43285 1.40089 1.00451 0.86859 0.81133 0.84150 0.77629 1.20240 1.21379 1.18947 1.21346 0.89453 0.94790 0.95839 0.91876 1.21747 0.95127 1.00468 0.98151 1.21564 0.96905 0.95879 1.01072 1.21882 0.99626 0.95396 0.90048 1.60156 1.16648 1.23114 1.32042 1.21895 0.85886 0.97418 1.00602 0.93579 0.93304 0.92199 0.93449 0.92535 0.95250 0.95778 0.92788 0.92047 0.92286 0.91253 0.92173 0.95819 0.91514 0.84452 0.89923 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.90 37.16 0.37 -2.11 16 2 C 0.05 0.98 5.27 -3.83 -0.02 0.96 16 3 N -0.53 -11.15 4.57 -227.98 -1.04 -12.19 16 4 C 0.15 3.59 3.65 -4.97 -0.02 3.57 16 5 C -0.54 -15.08 8.04 -34.44 -0.28 -15.36 16 6 H 0.07 2.27 6.12 -52.48 -0.32 1.95 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 9 Si 0.88 21.52 27.38 -169.99 -4.65 16.87 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.27 6.68 56.52 0.38 -5.90 16 13 C 0.09 1.87 1.81 -67.63 -0.12 1.75 16 14 H 0.06 1.50 6.61 -51.93 -0.34 1.15 16 15 C -0.12 -1.90 4.88 -26.61 -0.13 -2.03 16 16 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 17 C 0.06 0.82 6.55 -3.84 -0.03 0.80 16 18 N -0.69 -11.14 6.84 -113.83 -0.78 -11.92 16 19 C 0.07 1.32 5.58 -3.85 -0.02 1.30 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 1.15 6.47 -51.93 -0.34 0.82 16 23 H 0.05 1.06 6.39 -51.93 -0.33 0.73 16 24 H 0.06 0.98 5.70 -51.93 -0.30 0.68 16 25 H 0.03 0.72 5.73 -51.93 -0.30 0.42 16 26 H 0.02 0.58 5.45 -51.93 -0.28 0.30 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.06 0.97 6.26 -51.93 -0.33 0.65 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.34 4.70 8.90 -39.29 -0.35 4.35 16 35 H 0.08 1.73 6.44 -51.93 -0.33 1.39 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 268.41 15.07 4.04 4.04 Total: -1.00 -29.79 268.41 -7.92 -37.71 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.76 Total: 3.21 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.51 Total: -10.93 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -1.05 Total: -50.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.65 Total: 16.87 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.79 -7.92 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.144 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds