Wall clock time and date at job start Sun Mar 29 2020 21:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47290 * 2 1 4 4 C 1.46901 * 110.99776 * 292.73444 * 3 2 1 5 5 C 1.50705 * 109.47351 * 296.94605 * 4 3 2 6 6 H 1.08004 * 119.99493 * 4.65518 * 5 4 3 7 7 C 1.37869 * 120.00019 * 184.65594 * 5 4 3 8 8 N 1.31514 * 119.99991 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00144 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46817 * 90.00483 * 9 7 5 11 11 H 1.48501 * 109.47019 * 210.00156 * 9 7 5 12 12 H 1.48499 * 109.47056 * 330.00276 * 9 7 5 13 13 C 1.46900 * 110.99978 * 168.78477 * 3 2 1 14 14 H 1.08995 * 109.50469 * 64.02638 * 13 3 2 15 15 C 1.53124 * 109.49987 * 303.94709 * 13 3 2 16 16 C 1.53120 * 109.15619 * 182.40758 * 15 13 3 17 17 C 1.53029 * 109.28290 * 57.65770 * 16 15 13 18 18 N 1.46846 * 109.51463 * 300.82879 * 17 16 15 19 19 C 1.46829 * 111.21361 * 61.74050 * 18 17 16 20 20 H 1.09003 * 109.47329 * 178.50199 * 1 2 3 21 21 H 1.08990 * 109.47302 * 298.50361 * 1 2 3 22 22 H 1.09004 * 109.46719 * 58.50400 * 1 2 3 23 23 H 1.09002 * 109.47251 * 239.99222 * 2 1 3 24 24 H 1.09002 * 109.46582 * 119.99712 * 2 1 3 25 25 H 1.09002 * 109.46968 * 56.94372 * 4 3 2 26 26 H 1.09000 * 109.47265 * 176.94710 * 4 3 2 27 27 H 0.97001 * 120.00301 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.52037 * 62.50768 * 15 13 3 29 29 H 1.08993 * 109.57789 * 302.34696 * 15 13 3 30 30 H 1.09007 * 109.50148 * 297.71241 * 16 15 13 31 31 H 1.09004 * 109.50274 * 177.60043 * 16 15 13 32 32 H 1.09009 * 109.46166 * 60.83381 * 17 16 15 33 33 H 1.08997 * 109.46658 * 180.81087 * 17 16 15 34 34 H 1.00905 * 111.00266 * 185.83671 * 18 17 16 35 35 H 1.08999 * 109.46392 * 178.23482 * 19 18 17 36 36 H 1.09001 * 109.45903 * 58.26875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6955 2.0579 -1.2649 5 6 2.4015 1.3617 -2.3998 6 1 2.9673 0.4610 -2.2122 7 6 2.3251 1.8744 -3.6773 8 7 2.9408 1.2665 -4.6677 9 14 1.3458 3.4318 -4.0017 10 1 2.2309 4.6141 -3.8473 11 1 0.8034 3.3966 -5.3837 12 1 0.2247 3.5225 -3.0321 13 6 3.4635 1.4328 0.2667 14 1 3.9996 0.9360 -0.5418 15 6 3.7626 0.7232 1.5902 16 6 5.2603 0.8299 1.8904 17 6 5.6622 2.3057 1.9381 18 7 5.3564 2.9394 0.6492 19 6 3.9173 2.8912 0.3616 20 1 -0.3634 -1.0273 -0.0269 21 1 -0.3633 0.4904 0.9030 22 1 -0.3633 0.5369 -0.8763 23 1 1.8934 -0.5140 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 0.6187 2.0217 -1.4301 26 1 2.0210 3.0971 -1.2175 27 1 2.8874 1.6274 -5.5665 28 1 3.4806 -0.3268 1.5124 29 1 3.1956 1.1940 2.3933 30 1 5.8252 0.3240 1.1074 31 1 5.4728 0.3636 2.8524 32 1 5.1069 2.8079 2.7305 33 1 6.7308 2.3849 2.1374 34 1 5.6988 3.8882 0.6224 35 1 3.7189 3.3957 -0.5840 36 1 3.3703 3.3906 1.1613 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082500755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:33 Heat of formation + Delta-G solvation = -21.529969 kcal Electronic energy + Delta-G solvation = -15176.712794 eV Core-core repulsion = 12887.466259 eV Total energy + Delta-G solvation = -2289.246535 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27642 -37.50734 -34.60963 -32.83921 -32.15651 -30.48378 -27.97278 -25.42094 -24.10696 -23.09176 -21.36180 -20.51238 -18.76252 -17.90476 -16.50550 -16.22402 -15.91701 -15.33787 -15.27961 -14.71189 -14.53121 -14.41211 -13.71641 -13.69423 -13.47328 -13.09500 -12.63342 -12.39511 -12.28294 -12.18160 -12.04284 -11.79022 -11.66448 -11.54872 -11.30902 -10.88969 -10.74547 -9.32307 -8.95342 -8.29336 -6.32581 1.33617 1.34884 1.46820 2.33760 3.06064 3.07532 3.60329 3.88822 4.05580 4.12006 4.30011 4.42843 4.52796 4.57768 4.66445 4.72727 4.82112 4.84540 4.95614 4.96990 5.05715 5.11473 5.16247 5.21382 5.24255 5.33774 5.41153 5.49322 5.59964 6.03603 6.19195 6.40551 6.49014 6.58944 6.73407 7.32843 8.87512 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.011240 C = 0.009296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.607432 B = 2490.457732 C = 3011.295847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.049 3.951 3 N -0.525 5.525 4 C 0.159 3.841 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.245 1.245 13 C 0.094 3.906 14 H 0.011 0.989 15 C -0.110 4.110 16 C -0.114 4.114 17 C 0.060 3.940 18 N -0.704 5.704 19 C 0.079 3.921 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.007 0.993 24 H 0.083 0.917 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.351 0.649 35 H 0.051 0.949 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 2.572 14.509 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 N -0.248 5.248 4 C 0.031 3.969 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.169 1.169 13 C -0.015 4.015 14 H 0.029 0.971 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.069 4.069 18 N -0.337 5.337 19 C -0.050 4.050 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.025 0.975 24 H 0.101 0.899 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.170 0.830 35 H 0.069 0.931 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.436 2.269 14.364 14.548 hybrid contribution -0.068 0.592 -1.214 1.352 sum 0.368 2.861 13.150 13.462 Atomic orbital electron populations 1.21669 0.94217 1.01652 1.01682 1.22059 0.96726 0.89634 0.99467 1.62549 1.13570 1.15911 1.32812 1.20067 0.96031 0.94465 0.86291 1.21807 1.31372 1.10823 0.93591 0.95272 1.25886 0.96283 1.00725 0.95862 1.70087 1.45524 1.42357 1.01051 0.85750 0.80054 0.79543 0.77865 1.19221 1.21055 1.16880 1.21386 0.88018 0.95856 0.96282 0.97100 1.21692 0.97039 0.99983 0.96026 1.21598 0.94890 0.96644 1.02144 1.21993 1.01336 0.94611 0.88983 1.60099 1.14998 1.24456 1.34191 1.21676 0.87782 0.96035 0.99548 0.91336 0.91268 0.94378 0.97505 0.89875 0.95050 0.95367 0.92691 0.92021 0.90777 0.93226 0.88754 0.94204 0.89172 0.82972 0.93050 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.90 71.98 0.71 -3.79 16 2 C 0.05 1.91 5.27 86.30 0.46 2.37 16 3 N -0.52 -21.83 4.57 -875.21 -4.00 -25.83 16 4 C 0.16 7.66 3.65 85.56 0.31 7.97 16 5 C -0.54 -31.11 8.04 25.60 0.21 -30.90 16 6 H 0.03 1.91 6.12 -2.91 -0.02 1.90 16 7 C 0.01 0.58 5.47 84.65 0.46 1.05 16 8 N -0.95 -60.53 13.96 21.44 0.30 -60.23 16 9 Si 0.94 44.72 27.38 68.60 1.88 46.60 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.25 -10.77 6.68 99.48 0.66 -10.10 16 13 C 0.09 3.73 1.81 44.97 0.08 3.82 16 14 H 0.01 0.55 6.61 -2.39 -0.02 0.53 16 15 C -0.11 -3.36 4.88 30.68 0.15 -3.21 16 16 C -0.11 -2.99 6.09 30.64 0.19 -2.80 16 17 C 0.06 1.46 6.55 86.32 0.57 2.02 16 18 N -0.70 -21.94 6.84 -514.06 -3.52 -25.46 16 19 C 0.08 2.90 5.58 86.33 0.48 3.38 16 20 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.04 1.42 6.47 -2.38 -0.02 1.41 16 23 H 0.01 0.31 6.39 -2.39 -0.02 0.30 16 24 H 0.08 2.77 5.70 -2.39 -0.01 2.76 16 25 H 0.03 1.51 5.73 -2.39 -0.01 1.50 16 26 H 0.03 1.35 5.45 -2.39 -0.01 1.34 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.06 1.86 6.26 -2.39 -0.01 1.85 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.35 9.21 8.90 -89.69 -0.80 8.41 16 35 H 0.05 2.17 6.44 -2.39 -0.02 2.15 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.22 268.41 -1.51 -68.72 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.22 Total: 16.31 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.61 Total: -20.10 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -7.22 Total: -111.53 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -67.22 -1.51 -68.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082500755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.193 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds