Wall clock time and date at job start Sun Mar 29 2020 22:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00231 * 3 2 1 6 6 H 1.48502 * 109.46865 * 59.99863 * 3 2 1 7 7 C 1.40053 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99823 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99731 * 0.02562 * 7 2 1 10 10 O 1.21693 * 120.00285 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99913 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00050 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47214 * 180.02562 * 12 11 9 14 14 C 1.53175 * 109.53913 * 65.44419 * 13 12 11 15 15 C 1.53092 * 109.16179 * 176.85000 * 14 13 12 16 16 O 1.42910 * 109.41107 * 302.39040 * 15 14 13 17 17 C 1.42900 * 114.09727 * 61.16189 * 16 15 14 18 18 C 1.53090 * 109.41229 * 298.83586 * 17 16 15 19 19 H 0.96995 * 120.00184 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99661 * 0.02562 * 11 9 7 21 21 H 1.09005 * 109.46742 * 60.00001 * 12 11 9 22 22 H 1.09005 * 109.47088 * 300.00318 * 12 11 9 23 23 H 1.08997 * 109.61228 * 305.22714 * 13 12 11 24 24 H 1.09006 * 109.52647 * 296.75300 * 14 13 12 25 25 H 1.08998 * 109.52537 * 56.94192 * 14 13 12 26 26 H 1.08998 * 109.48147 * 182.40843 * 15 14 13 27 27 H 1.08997 * 109.48550 * 62.37144 * 15 14 13 28 28 H 1.09003 * 109.47953 * 178.86010 * 17 16 15 29 29 H 1.08995 * 109.49265 * 58.82602 * 17 16 15 30 30 H 1.09001 * 109.52724 * 297.70937 * 18 17 16 31 31 H 1.09000 * 109.52338 * 177.51272 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6477 0.0005 12 6 1.2167 -4.9165 0.0000 13 6 2.2109 -6.0794 0.0007 14 6 2.9988 -6.0789 1.3143 15 6 3.9344 -7.2904 1.3396 16 8 3.1671 -8.4863 1.1867 17 6 2.4464 -8.5637 -0.0448 18 6 1.4510 -7.4033 -0.1256 19 1 -0.4850 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0009 21 1 0.5904 -4.9740 -0.8903 22 1 0.5896 -4.9744 0.8897 23 1 2.8995 -5.9726 -0.8374 24 1 3.5862 -5.1635 1.3865 25 1 2.3066 -6.1357 2.1544 26 1 4.4665 -7.3190 2.2904 27 1 4.6524 -7.2124 0.5232 28 1 1.9065 -9.5095 -0.0912 29 1 3.1447 -8.5023 -0.8794 30 1 0.7275 -7.4868 0.6853 31 1 0.9315 -7.4351 -1.0833 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082545611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:40 Heat of formation + Delta-G solvation = -105.752468 kcal Electronic energy + Delta-G solvation = -14223.913939 eV Core-core repulsion = 11697.463486 eV Total energy + Delta-G solvation = -2526.450453 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.40423 -37.24084 -34.83658 -32.55991 -31.66802 -31.00093 -27.42162 -25.60734 -23.50720 -22.40153 -19.94790 -19.59450 -17.25680 -16.01236 -15.95879 -15.27172 -14.99686 -14.63758 -14.29108 -13.96617 -13.25293 -13.02237 -12.37600 -12.25931 -11.96167 -11.43058 -11.27020 -11.13984 -10.98762 -10.67157 -10.48123 -10.41517 -10.20526 -10.15041 -9.45066 -8.85214 -7.59840 -7.47084 -6.17649 -4.63091 3.13179 3.21194 3.25668 3.87648 4.11055 4.60303 4.66305 4.84067 4.95977 5.03421 5.15333 5.29824 5.44470 5.51798 5.66458 5.76418 5.79695 5.91089 5.95832 6.08440 6.24040 6.30818 6.55122 6.66741 7.18286 7.44161 7.94556 8.12288 8.34463 9.03516 9.55804 10.61554 10.80430 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064822 B = 0.006132 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.849564 B = 4565.017807 C = 4867.802660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.767 5.767 12 C 0.140 3.860 13 C -0.099 4.099 14 C -0.149 4.149 15 C 0.061 3.939 16 O -0.387 6.387 17 C 0.063 3.937 18 C -0.149 4.149 19 H 0.267 0.733 20 H 0.378 0.622 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.389 -11.915 0.219 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.423 5.423 12 C 0.015 3.985 13 C -0.118 4.118 14 C -0.187 4.187 15 C -0.016 4.016 16 O -0.306 6.306 17 C -0.014 4.014 18 C -0.187 4.187 19 H 0.078 0.922 20 H 0.210 0.790 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.286 -11.956 0.358 13.513 hybrid contribution 0.877 1.079 -0.241 1.412 sum 7.164 -10.877 0.117 13.024 Atomic orbital electron populations 1.70033 1.07075 1.27119 1.35552 1.25715 0.94603 1.00300 0.92622 0.86326 0.80463 0.81796 0.78207 1.18805 1.20170 1.20166 1.20925 0.93564 0.89459 1.54372 0.91452 1.18235 0.87216 0.82514 0.76323 1.90598 1.14139 1.86929 1.54825 1.46135 1.08427 1.04974 1.82776 1.20874 0.93551 0.83511 1.00592 1.21426 0.97767 0.94850 0.97778 1.22236 0.99460 0.98622 0.98397 1.22610 0.92863 0.84516 1.01576 1.87897 1.63769 1.40030 1.38935 1.22558 0.93721 0.98666 0.86474 1.22180 0.98843 0.94548 1.03141 0.92184 0.79005 0.93443 0.93404 0.90964 0.90382 0.90924 0.89091 0.93376 0.89123 0.93386 0.90801 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.38 11.83 55.55 0.66 -22.72 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.23 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.55 -15.59 9.54 -35.63 -0.34 -15.93 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.00 7.75 -12.99 -0.10 15.90 16 10 O -0.58 -19.25 15.02 5.19 0.08 -19.17 16 11 N -0.77 -17.27 5.31 -61.72 -0.33 -17.60 16 12 C 0.14 2.71 5.07 -4.04 -0.02 2.69 16 13 C -0.10 -1.42 2.31 -90.44 -0.21 -1.63 16 14 C -0.15 -2.00 5.26 -26.59 -0.14 -2.14 16 15 C 0.06 0.71 6.84 37.21 0.25 0.96 16 16 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 17 C 0.06 0.69 6.84 37.20 0.25 0.94 16 18 C -0.15 -1.83 5.42 -26.59 -0.14 -1.98 16 19 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 20 H 0.38 7.44 7.69 -40.82 -0.31 7.12 16 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.08 1.05 7.31 -51.93 -0.38 0.67 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 260.89 15.07 3.93 3.93 Total: -1.00 -34.54 260.89 -6.07 -40.61 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.47 Total: 3.94 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.54 Total: 1.18 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.33 Total: -40.32 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.30 Total: -24.57 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.54 -6.07 -40.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082545611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.140 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds