Wall clock time and date at job start Sun Mar 29 2020 22:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00231 * 3 2 1 6 6 H 1.48502 * 109.46865 * 59.99863 * 3 2 1 7 7 C 1.40053 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99823 * 180.02562 * 7 2 1 9 9 C 1.46371 * 119.99731 * 0.02562 * 7 2 1 10 10 O 1.21693 * 120.00285 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99913 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00050 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47214 * 180.02562 * 12 11 9 14 14 C 1.53175 * 109.53913 * 65.44419 * 13 12 11 15 15 C 1.53092 * 109.16179 * 176.85000 * 14 13 12 16 16 O 1.42910 * 109.41107 * 302.39040 * 15 14 13 17 17 C 1.42900 * 114.09727 * 61.16189 * 16 15 14 18 18 C 1.53090 * 109.41229 * 298.83586 * 17 16 15 19 19 H 0.96995 * 120.00184 * 0.02562 * 1 2 3 20 20 H 0.96999 * 119.99661 * 0.02562 * 11 9 7 21 21 H 1.09005 * 109.46742 * 60.00001 * 12 11 9 22 22 H 1.09005 * 109.47088 * 300.00318 * 12 11 9 23 23 H 1.08997 * 109.61228 * 305.22714 * 13 12 11 24 24 H 1.09006 * 109.52647 * 296.75300 * 14 13 12 25 25 H 1.08998 * 109.52537 * 56.94192 * 14 13 12 26 26 H 1.08998 * 109.48147 * 182.40843 * 15 14 13 27 27 H 1.08997 * 109.48550 * 62.37144 * 15 14 13 28 28 H 1.09003 * 109.47953 * 178.86010 * 17 16 15 29 29 H 1.08995 * 109.49265 * 58.82602 * 17 16 15 30 30 H 1.09001 * 109.52724 * 297.70937 * 18 17 16 31 31 H 1.09000 * 109.52338 * 177.51272 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3964 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6477 0.0005 12 6 1.2167 -4.9165 0.0000 13 6 2.2109 -6.0794 0.0007 14 6 2.9988 -6.0789 1.3143 15 6 3.9344 -7.2904 1.3396 16 8 3.1671 -8.4863 1.1867 17 6 2.4464 -8.5637 -0.0448 18 6 1.4510 -7.4033 -0.1256 19 1 -0.4850 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0009 21 1 0.5904 -4.9740 -0.8903 22 1 0.5896 -4.9744 0.8897 23 1 2.8995 -5.9726 -0.8374 24 1 3.5862 -5.1635 1.3865 25 1 2.3066 -6.1357 2.1544 26 1 4.4665 -7.3190 2.2904 27 1 4.6524 -7.2124 0.5232 28 1 1.9065 -9.5095 -0.0912 29 1 3.1447 -8.5023 -0.8794 30 1 0.7275 -7.4868 0.6853 31 1 0.9315 -7.4351 -1.0833 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082545611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:40 Heat of formation + Delta-G solvation = -131.991748 kcal Electronic energy + Delta-G solvation = -14225.051759 eV Core-core repulsion = 11697.463486 eV Total energy + Delta-G solvation = -2527.588274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51197 -39.22080 -36.36434 -34.65253 -33.43494 -31.99199 -29.22795 -27.35514 -24.49996 -23.75128 -21.65197 -21.08443 -19.23128 -17.52057 -17.01295 -16.87285 -16.46043 -15.93578 -15.79194 -15.56210 -14.75393 -14.52983 -14.21334 -13.51675 -13.31182 -13.06378 -12.97304 -12.73009 -12.61918 -12.24145 -11.99332 -11.93604 -11.52216 -11.19306 -10.95955 -10.47107 -9.88729 -9.49607 -8.30564 -6.87326 1.40116 1.40304 1.58611 2.24280 2.45887 2.98747 3.11746 3.58441 3.72827 3.81753 3.91037 4.10163 4.33019 4.40950 4.53076 4.66173 4.72056 4.81544 4.82595 4.92292 4.97701 5.15441 5.20236 5.30942 5.39750 5.86161 6.22654 6.26020 6.29217 6.85397 7.54183 8.47897 8.66332 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064822 B = 0.006132 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.849564 B = 4565.017807 C = 4867.802660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.752 5.752 12 C 0.142 3.858 13 C -0.088 4.088 14 C -0.148 4.148 15 C 0.064 3.936 16 O -0.404 6.404 17 C 0.064 3.936 18 C -0.147 4.147 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.031 0.969 22 H 0.025 0.975 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 -12.065 -0.081 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.609 4.609 8 H 0.107 0.893 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.407 5.407 12 C 0.017 3.983 13 C -0.107 4.107 14 C -0.186 4.186 15 C -0.012 4.012 16 O -0.323 6.323 17 C -0.013 4.013 18 C -0.185 4.185 19 H 0.084 0.916 20 H 0.229 0.771 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.738 -12.161 0.058 14.975 hybrid contribution 0.095 1.061 -0.148 1.076 sum 8.833 -11.100 -0.090 14.186 Atomic orbital electron populations 1.70202 1.09668 1.28933 1.36604 1.27029 0.95526 1.05129 0.91140 0.84931 0.79362 0.75193 0.78526 1.16815 1.19321 1.19379 1.21477 0.94784 0.90034 1.54654 0.89271 1.18689 0.86856 0.84555 0.76086 1.90550 1.16392 1.88086 1.57338 1.45790 1.09235 1.04653 1.81032 1.20969 0.94517 0.84110 0.98694 1.21344 0.96861 0.93479 0.98988 1.22218 0.99448 0.99886 0.97048 1.22664 0.92375 0.82964 1.03189 1.87888 1.64061 1.40370 1.39953 1.22682 0.93607 0.98598 0.86387 1.22184 0.99026 0.94036 1.03291 0.91557 0.77082 0.95067 0.95678 0.89501 0.90551 0.92600 0.87642 0.91619 0.87211 0.91729 0.91935 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.30 11.83 21.84 0.26 -51.04 16 2 C 0.03 1.49 5.50 85.31 0.47 1.96 16 3 Si 1.00 41.05 29.56 68.60 2.03 43.08 16 4 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.57 -32.79 9.54 24.83 0.24 -32.56 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 31.68 7.75 86.36 0.67 32.35 16 10 O -0.64 -43.90 15.02 -4.33 -0.07 -43.96 16 11 N -0.75 -34.24 5.31 -467.38 -2.48 -36.72 16 12 C 0.14 5.62 5.07 86.38 0.44 6.06 16 13 C -0.09 -2.42 2.31 -10.68 -0.02 -2.44 16 14 C -0.15 -3.79 5.26 30.68 0.16 -3.62 16 15 C 0.06 1.33 6.84 72.01 0.49 1.82 16 16 O -0.40 -9.44 10.77 -148.98 -1.60 -11.04 16 17 C 0.06 1.22 6.84 72.01 0.49 1.72 16 18 C -0.15 -3.42 5.42 30.68 0.17 -3.26 16 19 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 20 H 0.40 15.23 7.69 -92.71 -0.71 14.52 16 21 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.08 1.95 7.31 -2.38 -0.02 1.94 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -76.85 260.89 1.64 -75.21 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.40 Total: 22.45 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 3.10 Total: 2.03 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.23 Total: -87.76 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -1.67 Total: -55.00 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -76.85 1.64 -75.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082545611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.786 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds