Wall clock time and date at job start Sun Mar 29 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99849 * 2 1 4 4 C 1.46903 * 110.99722 * 123.95030 * 2 1 3 5 5 H 1.09009 * 109.53146 * 54.90308 * 4 2 1 6 6 C 1.53099 * 109.48797 * 294.81222 * 4 2 1 7 7 C 1.53126 * 109.15071 * 182.39910 * 6 4 2 8 8 C 1.53039 * 109.28009 * 57.65227 * 7 6 4 9 9 N 1.46854 * 109.52227 * 300.82107 * 8 7 6 10 10 C 1.46898 * 110.99958 * 185.83752 * 9 8 7 11 11 C 1.50704 * 109.46918 * 65.78751 * 10 9 8 12 12 H 1.07995 * 120.00254 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99638 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00308 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99571 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47386 * 59.99610 * 15 13 11 17 17 H 1.48502 * 109.46910 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46837 * 299.99343 * 15 13 11 19 19 C 1.46847 * 111.19790 * 61.74204 * 9 8 7 20 20 H 1.08994 * 109.47150 * 296.05027 * 1 2 3 21 21 H 1.09000 * 109.46807 * 56.05017 * 1 2 3 22 22 H 1.09001 * 109.47165 * 176.04662 * 1 2 3 23 23 H 1.09002 * 109.46880 * 183.95153 * 3 2 1 24 24 H 1.09004 * 109.47074 * 303.95122 * 3 2 1 25 25 H 1.08994 * 109.47409 * 63.95416 * 3 2 1 26 26 H 1.08990 * 109.52931 * 62.49657 * 6 4 2 27 27 H 1.09002 * 109.57693 * 302.33188 * 6 4 2 28 28 H 1.08994 * 109.50076 * 297.71308 * 7 6 4 29 29 H 1.08998 * 109.53581 * 177.61293 * 7 6 4 30 30 H 1.08993 * 109.46667 * 180.80353 * 8 7 6 31 31 H 1.09008 * 109.45528 * 60.82642 * 8 7 6 32 32 H 1.08994 * 109.47159 * 185.78975 * 10 9 8 33 33 H 1.09006 * 109.47282 * 305.79100 * 10 9 8 34 34 H 0.96993 * 120.00248 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46481 * 58.27472 * 19 9 8 36 36 H 1.08994 * 109.46283 * 178.25325 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5746 -1.7714 1.1261 6 6 1.6130 -0.0667 2.4449 7 6 2.2159 -0.8381 3.6222 8 6 3.7343 -0.9192 3.4488 9 7 4.0483 -1.5966 2.1842 10 6 5.4946 -1.8158 2.0495 11 6 5.9563 -2.7857 3.1065 12 1 5.2463 -3.1984 3.8079 13 6 7.2852 -3.1463 3.1780 14 7 8.1497 -2.6442 2.3236 15 14 7.8573 -4.3491 4.4878 16 1 7.1438 -5.6404 4.3196 17 1 9.3194 -4.5706 4.3516 18 1 7.5637 -3.7927 5.8329 19 6 3.5201 -0.8490 1.0359 20 1 -0.3633 0.4513 0.9232 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8723 0.9232 26 1 0.5277 -0.0440 2.5419 27 1 1.9998 0.9523 2.4407 28 1 1.7986 -1.8446 3.6497 29 1 1.9831 -0.3221 4.5536 30 1 4.1652 -1.4801 4.2780 31 1 4.1524 0.0875 3.4351 32 1 5.7097 -2.2246 1.0623 33 1 6.0188 -0.8679 2.1723 34 1 9.0845 -2.8981 2.3737 35 1 3.9394 0.1571 1.0336 36 1 3.7952 -1.3592 0.1129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082681506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:58 Heat of formation + Delta-G solvation = 5.400664 kcal Electronic energy + Delta-G solvation = -14844.242898 eV Core-core repulsion = 12556.164163 eV Total energy + Delta-G solvation = -2288.078735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21681 -36.12279 -33.06316 -31.63774 -29.52289 -27.58795 -26.83291 -24.47649 -23.24337 -21.85616 -20.36814 -18.86673 -16.27487 -15.83750 -15.11824 -14.59095 -14.52307 -14.26237 -14.00966 -13.33424 -13.04014 -12.81431 -12.15004 -12.07326 -11.89368 -11.68121 -11.41897 -11.14062 -10.78665 -10.70485 -10.60583 -10.36718 -10.26256 -10.03538 -9.63392 -9.13817 -8.40779 -8.11633 -7.17225 -5.99883 -4.01270 3.35266 3.39189 3.42181 4.05396 4.45978 4.93447 5.10959 5.25968 5.28696 5.32330 5.36555 5.44472 5.54024 5.60916 5.77376 5.81574 5.88512 6.01629 6.06030 6.15654 6.21973 6.28070 6.44574 6.49734 6.73295 6.77486 7.17758 7.20041 7.36503 7.40113 7.83534 8.14148 8.25756 8.59710 9.06218 9.62713 11.11039 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055766 B = 0.007041 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.975610 B = 3975.615548 C = 4234.715243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.017 3.983 4 C 0.088 3.912 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.112 4.112 8 C 0.064 3.936 9 N -0.536 5.536 10 C 0.195 3.805 11 C -0.507 4.507 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.066 3.934 20 H 0.025 0.975 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.016 0.984 32 H 0.031 0.969 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.021 0.979 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 6.365 -1.469 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.131 4.131 4 C -0.021 4.021 5 H 0.107 0.893 6 C -0.189 4.189 7 C -0.151 4.151 8 C -0.065 4.065 9 N -0.261 5.261 10 C 0.070 3.930 11 C -0.546 4.546 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.063 4.063 20 H 0.044 0.956 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.816 5.669 -1.967 14.151 hybrid contribution 0.547 0.630 1.373 1.607 sum -12.269 6.299 -0.594 13.804 Atomic orbital electron populations 1.22363 0.87952 1.02054 1.00047 1.62189 1.07392 1.13738 1.43064 1.22472 1.01454 0.89240 0.99954 1.21783 0.96239 0.97316 0.86721 0.89341 1.22225 0.99789 0.99897 0.97031 1.21559 0.96781 1.00294 0.96472 1.21948 0.93584 0.96307 0.94620 1.61949 1.18405 1.45923 0.99841 1.19689 0.79850 0.95463 0.97973 1.21135 0.92986 1.25596 1.14894 0.91904 1.24992 0.96719 0.96614 0.96292 1.69948 1.03075 1.44298 1.36558 0.86559 0.77384 0.81592 0.81864 1.20150 1.21372 1.20320 1.21998 0.92297 0.96236 0.95769 0.95601 0.91856 0.91488 0.90908 0.91961 0.95434 0.92622 0.92324 0.91399 0.92511 0.89800 0.96548 0.95108 0.99268 0.92885 0.96047 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.31 60.07 0.56 0.83 16 2 N -0.54 -7.56 5.01 -243.09 -1.22 -8.78 16 3 C 0.02 0.22 8.82 60.06 0.53 0.75 16 4 C 0.09 1.38 2.39 -67.64 -0.16 1.22 16 5 H 0.09 1.47 8.13 -51.92 -0.42 1.04 16 6 C -0.15 -2.18 4.59 -26.62 -0.12 -2.30 16 7 C -0.11 -1.78 6.09 -26.65 -0.16 -1.94 16 8 C 0.06 1.27 5.30 -3.83 -0.02 1.25 16 9 N -0.54 -11.86 4.65 -236.11 -1.10 -12.96 16 10 C 0.20 5.20 4.72 -4.98 -0.02 5.18 16 11 C -0.51 -14.42 8.43 -34.44 -0.29 -14.71 16 12 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.07 1.26 4.56 -3.84 -0.02 1.24 16 20 H 0.03 0.28 6.50 -51.93 -0.34 -0.06 16 21 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.00 6.31 -51.93 -0.33 0.67 16 24 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 25 H 0.03 0.34 6.23 -51.93 -0.32 0.01 16 26 H 0.06 0.72 6.66 -51.93 -0.35 0.37 16 27 H 0.06 0.86 6.27 -51.93 -0.33 0.53 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.80 6.70 -51.93 -0.35 1.45 16 31 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.03 0.88 7.99 -51.93 -0.41 0.46 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.02 0.41 6.38 -51.93 -0.33 0.08 16 36 H 0.07 1.48 8.02 -51.93 -0.42 1.06 16 LS Contribution 275.01 15.07 4.14 4.14 Total: -1.00 -29.62 275.01 -8.32 -37.94 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -6.06 Total: -3.82 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.19 Total: -7.00 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -1.58 Total: -48.03 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.62 -8.32 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082681506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.341 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds