Wall clock time and date at job start Sun Mar 29 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99849 * 2 1 4 4 C 1.46903 * 110.99722 * 123.95030 * 2 1 3 5 5 H 1.09009 * 109.53146 * 54.90308 * 4 2 1 6 6 C 1.53099 * 109.48797 * 294.81222 * 4 2 1 7 7 C 1.53126 * 109.15071 * 182.39910 * 6 4 2 8 8 C 1.53039 * 109.28009 * 57.65227 * 7 6 4 9 9 N 1.46854 * 109.52227 * 300.82107 * 8 7 6 10 10 C 1.46898 * 110.99958 * 185.83752 * 9 8 7 11 11 C 1.50704 * 109.46918 * 65.78751 * 10 9 8 12 12 H 1.07995 * 120.00254 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99638 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00308 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99571 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47386 * 59.99610 * 15 13 11 17 17 H 1.48502 * 109.46910 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46837 * 299.99343 * 15 13 11 19 19 C 1.46847 * 111.19790 * 61.74204 * 9 8 7 20 20 H 1.08994 * 109.47150 * 296.05027 * 1 2 3 21 21 H 1.09000 * 109.46807 * 56.05017 * 1 2 3 22 22 H 1.09001 * 109.47165 * 176.04662 * 1 2 3 23 23 H 1.09002 * 109.46880 * 183.95153 * 3 2 1 24 24 H 1.09004 * 109.47074 * 303.95122 * 3 2 1 25 25 H 1.08994 * 109.47409 * 63.95416 * 3 2 1 26 26 H 1.08990 * 109.52931 * 62.49657 * 6 4 2 27 27 H 1.09002 * 109.57693 * 302.33188 * 6 4 2 28 28 H 1.08994 * 109.50076 * 297.71308 * 7 6 4 29 29 H 1.08998 * 109.53581 * 177.61293 * 7 6 4 30 30 H 1.08993 * 109.46667 * 180.80353 * 8 7 6 31 31 H 1.09008 * 109.45528 * 60.82642 * 8 7 6 32 32 H 1.08994 * 109.47159 * 185.78975 * 10 9 8 33 33 H 1.09006 * 109.47282 * 305.79100 * 10 9 8 34 34 H 0.96993 * 120.00248 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46481 * 58.27472 * 19 9 8 36 36 H 1.08994 * 109.46283 * 178.25325 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5746 -1.7714 1.1261 6 6 1.6130 -0.0667 2.4449 7 6 2.2159 -0.8381 3.6222 8 6 3.7343 -0.9192 3.4488 9 7 4.0483 -1.5966 2.1842 10 6 5.4946 -1.8158 2.0495 11 6 5.9563 -2.7857 3.1065 12 1 5.2463 -3.1984 3.8079 13 6 7.2852 -3.1463 3.1780 14 7 8.1497 -2.6442 2.3236 15 14 7.8573 -4.3491 4.4878 16 1 7.1438 -5.6404 4.3196 17 1 9.3194 -4.5706 4.3516 18 1 7.5637 -3.7927 5.8329 19 6 3.5201 -0.8490 1.0359 20 1 -0.3633 0.4513 0.9232 21 1 -0.3633 0.5739 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8723 0.9232 26 1 0.5277 -0.0440 2.5419 27 1 1.9998 0.9523 2.4407 28 1 1.7986 -1.8446 3.6497 29 1 1.9831 -0.3221 4.5536 30 1 4.1652 -1.4801 4.2780 31 1 4.1524 0.0875 3.4351 32 1 5.7097 -2.2246 1.0623 33 1 6.0188 -0.8679 2.1723 34 1 9.0845 -2.8981 2.3737 35 1 3.9394 0.1571 1.0336 36 1 3.7952 -1.3592 0.1129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082681506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:58 Heat of formation + Delta-G solvation = -15.953247 kcal Electronic energy + Delta-G solvation = -14845.168873 eV Core-core repulsion = 12556.164163 eV Total energy + Delta-G solvation = -2289.004710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57637 -37.58438 -35.00948 -33.33030 -30.95061 -28.90555 -28.46813 -25.92433 -24.82533 -23.43889 -21.96129 -20.22080 -18.45186 -17.27622 -16.50486 -16.27289 -15.79200 -15.70427 -15.42465 -14.83358 -14.52247 -14.34559 -13.95278 -13.52115 -13.09499 -12.99274 -12.79689 -12.61815 -12.51283 -12.43618 -12.14604 -12.01982 -11.70100 -11.64379 -11.38565 -11.04010 -10.61838 -9.20075 -8.99514 -8.20970 -6.31913 1.41017 1.44993 1.52856 2.39877 2.88785 3.11378 3.45500 3.84501 3.92986 4.07385 4.22526 4.29242 4.41862 4.48241 4.58844 4.68641 4.71093 4.74237 4.84504 4.91855 4.98369 5.03929 5.07564 5.12136 5.15801 5.21618 5.29602 5.43243 5.64281 6.02244 6.09817 6.16881 6.35071 6.64042 6.84175 7.37944 8.90351 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055766 B = 0.007041 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.975610 B = 3975.615548 C = 4234.715243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.018 3.982 4 C 0.098 3.902 5 H 0.082 0.918 6 C -0.142 4.142 7 C -0.103 4.103 8 C 0.063 3.937 9 N -0.542 5.542 10 C 0.210 3.790 11 C -0.525 4.525 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.068 3.932 20 H 0.036 0.964 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.009 0.991 32 H 0.001 0.999 33 H -0.042 1.042 34 H 0.265 0.735 35 H 0.017 0.983 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 6.442 -0.459 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.130 4.130 4 C -0.010 4.010 5 H 0.100 0.900 6 C -0.181 4.181 7 C -0.141 4.141 8 C -0.065 4.065 9 N -0.267 5.267 10 C 0.084 3.916 11 C -0.563 4.563 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.797 3.203 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.061 4.061 20 H 0.055 0.945 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.019 0.981 33 H -0.024 1.024 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.810 5.760 -0.961 15.920 hybrid contribution 1.148 0.655 0.986 1.649 sum -13.663 6.415 0.025 15.094 Atomic orbital electron populations 1.22438 0.85748 1.02780 1.01351 1.62134 1.09362 1.14268 1.42126 1.22476 1.00342 0.88876 1.01296 1.21553 0.93127 0.97819 0.88540 0.89967 1.22168 1.01373 0.99341 0.95242 1.21502 0.93049 1.01127 0.98471 1.21996 0.96878 0.95054 0.92584 1.61888 1.15241 1.47577 1.01976 1.19338 0.82694 0.93541 0.96064 1.21435 0.93551 1.26025 1.15318 0.91689 1.25970 0.96735 0.98444 0.98629 1.70087 1.03507 1.45683 1.38388 0.85385 0.76936 0.79029 0.78963 1.19234 1.20794 1.19060 1.22012 0.95182 0.95126 0.93769 0.94545 0.90159 0.91195 0.92896 0.89873 0.94657 0.89768 0.92180 0.91305 0.89797 0.91824 0.97310 0.98123 1.02399 0.92629 0.96471 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.31 127.69 1.19 1.66 16 2 N -0.56 -14.47 5.01 -922.99 -4.62 -19.09 16 3 C 0.02 0.43 8.82 127.69 1.13 1.55 16 4 C 0.10 2.98 2.39 44.96 0.11 3.08 16 5 H 0.08 2.61 8.13 -2.38 -0.02 2.59 16 6 C -0.14 -3.72 4.59 30.67 0.14 -3.58 16 7 C -0.10 -3.03 6.09 30.65 0.19 -2.85 16 8 C 0.06 2.51 5.30 86.32 0.46 2.97 16 9 N -0.54 -24.68 4.65 -900.91 -4.19 -28.87 16 10 C 0.21 11.77 4.72 85.56 0.40 12.17 16 11 C -0.53 -30.60 8.43 25.60 0.22 -30.39 16 12 H 0.06 3.68 7.12 -2.91 -0.02 3.66 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 15 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.07 2.64 4.56 86.32 0.39 3.04 16 20 H 0.04 0.63 6.50 -2.39 -0.02 0.62 16 21 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.05 1.44 6.31 -2.39 -0.02 1.43 16 24 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 25 H 0.03 0.78 6.23 -2.39 -0.01 0.76 16 26 H 0.08 1.80 6.66 -2.39 -0.02 1.78 16 27 H 0.06 1.59 6.27 -2.39 -0.01 1.57 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.06 2.77 6.70 -2.39 -0.02 2.75 16 31 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.00 0.04 7.99 -2.39 -0.02 0.02 16 33 H -0.04 -2.53 8.12 -2.38 -0.02 -2.55 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.02 0.68 6.38 -2.39 -0.02 0.67 16 36 H 0.06 2.33 8.02 -2.39 -0.02 2.31 16 Total: -1.00 -65.07 275.01 -0.79 -65.85 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.03 Total: 4.53 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.68 Total: -11.87 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -8.52 Total: -105.39 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.07 -0.79 -65.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082681506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.899 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds