Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00117 * 2 1 4 4 C 1.46900 * 111.00060 * 123.95351 * 2 1 3 5 5 H 1.09004 * 109.53805 * 299.90135 * 4 2 1 6 6 C 1.53124 * 109.50171 * 60.00032 * 4 2 1 7 7 C 1.53126 * 109.15878 * 177.59659 * 6 4 2 8 8 C 1.53029 * 109.27795 * 302.34185 * 7 6 4 9 9 N 1.46854 * 109.52283 * 59.18140 * 8 7 6 10 10 C 1.46901 * 111.00034 * 174.15832 * 9 8 7 11 11 C 1.50696 * 109.47020 * 293.95603 * 10 9 8 12 12 H 1.07995 * 120.00541 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99849 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00099 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99959 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47161 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47279 * 119.99870 * 15 13 11 18 18 H 1.48505 * 109.46770 * 239.99788 * 15 13 11 19 19 C 1.46843 * 111.19690 * 298.25524 * 9 8 7 20 20 H 1.09003 * 109.46834 * 296.04740 * 1 2 3 21 21 H 1.08999 * 109.47417 * 56.04364 * 1 2 3 22 22 H 1.08997 * 109.47161 * 176.04729 * 1 2 3 23 23 H 1.09001 * 109.47027 * 183.95230 * 3 2 1 24 24 H 1.09001 * 109.47005 * 303.95393 * 3 2 1 25 25 H 1.09001 * 109.47319 * 63.95607 * 3 2 1 26 26 H 1.08998 * 109.52745 * 57.68987 * 6 4 2 27 27 H 1.08999 * 109.52030 * 297.49443 * 6 4 2 28 28 H 1.08994 * 109.50285 * 62.28827 * 7 6 4 29 29 H 1.08998 * 109.50137 * 182.36505 * 7 6 4 30 30 H 1.08999 * 109.46487 * 179.19278 * 8 7 6 31 31 H 1.09001 * 109.46656 * 299.16371 * 8 7 6 32 32 H 1.09008 * 109.47071 * 53.95431 * 10 9 8 33 33 H 1.08997 * 109.47083 * 173.95301 * 10 9 8 34 34 H 0.96995 * 120.00193 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.45906 * 181.75382 * 19 9 8 36 36 H 1.08994 * 109.46526 * 301.73687 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6480 -0.3199 2.0695 6 6 1.5049 -2.2138 1.0498 7 6 2.1063 -3.0191 2.2050 8 6 3.6329 -2.9357 2.1381 9 7 4.0519 -1.5310 2.2267 10 6 5.5148 -1.4219 2.3050 11 6 5.9945 -2.0216 3.6016 12 1 5.2838 -2.4414 4.2980 13 6 7.3407 -2.0334 3.8992 14 7 8.2062 -1.5218 3.0514 15 14 7.9355 -2.7775 5.5061 16 1 6.7719 -3.2821 6.2786 17 1 8.8637 -3.9003 5.2182 18 1 8.6437 -1.7408 6.2994 19 6 3.5253 -0.7479 1.1016 20 1 -0.3633 0.4513 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9163 -0.8524 25 1 1.7044 1.8723 0.9233 26 1 1.8191 -2.6481 0.1007 27 1 0.4173 -2.2347 1.1188 28 1 1.7606 -2.6085 3.1536 29 1 1.7944 -4.0604 2.1239 30 1 4.0640 -3.4961 2.9676 31 1 3.9788 -3.3591 1.1952 32 1 5.9643 -1.9574 1.4687 33 1 5.8037 -0.3718 2.2615 34 1 9.1533 -1.5305 3.2606 35 1 3.8781 0.2806 1.1784 36 1 3.8715 -1.1816 0.1636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082681507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = 3.634169 kcal Electronic energy + Delta-G solvation = -14788.093559 eV Core-core repulsion = 12499.938223 eV Total energy + Delta-G solvation = -2288.155336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.98882 -36.13751 -33.17660 -31.74910 -29.52732 -27.81693 -26.65339 -24.15383 -23.25843 -21.59899 -20.40944 -19.13245 -16.29340 -15.92943 -14.93390 -14.66299 -14.49935 -14.14946 -13.90703 -13.22084 -13.19314 -12.63967 -12.39475 -12.21051 -11.81539 -11.61020 -11.30559 -11.04164 -10.96322 -10.75072 -10.59050 -10.34037 -10.10124 -10.01151 -9.52149 -9.12460 -8.42129 -8.20104 -7.18079 -6.00940 -4.02126 3.32037 3.39281 3.44265 4.02161 4.45183 4.99909 5.08552 5.22790 5.32991 5.35553 5.45749 5.52233 5.59129 5.66631 5.77787 5.84095 5.91810 5.97374 6.11163 6.21003 6.30248 6.34512 6.39179 6.47775 6.78081 6.78365 7.15785 7.20507 7.37108 7.40404 7.83593 8.13335 8.25508 8.59182 9.06117 9.62040 11.10073 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050005 B = 0.007197 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.810098 B = 3889.548665 C = 4258.778816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.022 3.978 4 C 0.088 3.912 5 H 0.047 0.953 6 C -0.109 4.109 7 C -0.116 4.116 8 C 0.063 3.937 9 N -0.537 5.537 10 C 0.194 3.806 11 C -0.505 4.505 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.063 3.937 20 H 0.022 0.978 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.020 0.980 32 H -0.009 1.009 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 1.281 -4.772 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.127 4.127 4 C -0.020 4.020 5 H 0.065 0.935 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.065 4.065 9 N -0.263 5.263 10 C 0.069 3.931 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.065 4.065 20 H 0.041 0.959 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.009 0.991 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.071 1.285 -4.794 13.982 hybrid contribution 0.543 -0.200 0.779 0.971 sum -12.528 1.084 -4.015 13.200 Atomic orbital electron populations 1.22385 0.87971 1.02078 0.99978 1.61999 1.07352 1.13716 1.43938 1.22422 1.01531 0.88741 0.99978 1.21693 0.95725 0.93754 0.90848 0.93539 1.21636 0.99156 0.94604 0.99342 1.21621 0.96606 0.98857 0.98405 1.21950 0.93376 0.90771 1.00397 1.61987 1.15089 1.09112 1.40084 1.19697 0.79708 0.97161 0.96503 1.21209 0.91755 1.37994 1.03457 0.91792 1.25001 0.96802 0.95750 0.97141 1.69973 1.02112 1.45965 1.35841 0.86447 0.78707 0.78797 0.83506 1.19661 1.21113 1.21039 1.22019 0.92447 0.98806 0.93276 0.95937 0.91842 0.91248 0.90723 0.91871 0.95686 0.91730 0.92631 0.91622 0.92133 0.89855 0.96226 0.99117 0.95299 0.93000 0.91510 0.95251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.21 60.06 0.55 0.83 16 2 N -0.55 -7.74 4.89 -243.08 -1.19 -8.93 16 3 C 0.02 0.28 9.11 60.06 0.55 0.83 16 4 C 0.09 1.42 2.11 -67.63 -0.14 1.27 16 5 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.11 -1.62 4.97 -26.60 -0.13 -1.75 16 7 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 8 C 0.06 1.27 5.30 -3.83 -0.02 1.25 16 9 N -0.54 -11.98 4.65 -236.12 -1.10 -13.08 16 10 C 0.19 5.19 4.72 -4.98 -0.02 5.16 16 11 C -0.51 -14.37 8.43 -34.44 -0.29 -14.66 16 12 H 0.06 1.80 7.14 -52.49 -0.37 1.42 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 15 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.06 1.22 4.36 -3.83 -0.02 1.20 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 22 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 23 H 0.07 1.03 6.26 -51.93 -0.33 0.71 16 24 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.79 6.72 -51.93 -0.35 1.44 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H -0.01 -0.26 8.12 -51.92 -0.42 -0.68 16 33 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.29 6.27 -51.93 -0.33 0.96 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 278.52 15.07 4.20 4.20 Total: -1.00 -29.89 278.52 -8.40 -38.29 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.24 Total: -4.53 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.22 Total: -6.43 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -1.55 Total: -48.30 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.89 -8.40 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082681507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.926 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds