Wall clock time and date at job start Sun Mar 29 2020 21:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00117 * 2 1 4 4 C 1.46900 * 111.00060 * 123.95351 * 2 1 3 5 5 H 1.09004 * 109.53805 * 299.90135 * 4 2 1 6 6 C 1.53124 * 109.50171 * 60.00032 * 4 2 1 7 7 C 1.53126 * 109.15878 * 177.59659 * 6 4 2 8 8 C 1.53029 * 109.27795 * 302.34185 * 7 6 4 9 9 N 1.46854 * 109.52283 * 59.18140 * 8 7 6 10 10 C 1.46901 * 111.00034 * 174.15832 * 9 8 7 11 11 C 1.50696 * 109.47020 * 293.95603 * 10 9 8 12 12 H 1.07995 * 120.00541 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99849 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00099 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99959 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47161 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47279 * 119.99870 * 15 13 11 18 18 H 1.48505 * 109.46770 * 239.99788 * 15 13 11 19 19 C 1.46843 * 111.19690 * 298.25524 * 9 8 7 20 20 H 1.09003 * 109.46834 * 296.04740 * 1 2 3 21 21 H 1.08999 * 109.47417 * 56.04364 * 1 2 3 22 22 H 1.08997 * 109.47161 * 176.04729 * 1 2 3 23 23 H 1.09001 * 109.47027 * 183.95230 * 3 2 1 24 24 H 1.09001 * 109.47005 * 303.95393 * 3 2 1 25 25 H 1.09001 * 109.47319 * 63.95607 * 3 2 1 26 26 H 1.08998 * 109.52745 * 57.68987 * 6 4 2 27 27 H 1.08999 * 109.52030 * 297.49443 * 6 4 2 28 28 H 1.08994 * 109.50285 * 62.28827 * 7 6 4 29 29 H 1.08998 * 109.50137 * 182.36505 * 7 6 4 30 30 H 1.08999 * 109.46487 * 179.19278 * 8 7 6 31 31 H 1.09001 * 109.46656 * 299.16371 * 8 7 6 32 32 H 1.09008 * 109.47071 * 53.95431 * 10 9 8 33 33 H 1.08997 * 109.47083 * 173.95301 * 10 9 8 34 34 H 0.96995 * 120.00193 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.45906 * 181.75382 * 19 9 8 36 36 H 1.08994 * 109.46526 * 301.73687 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6480 -0.3199 2.0695 6 6 1.5049 -2.2138 1.0498 7 6 2.1063 -3.0191 2.2050 8 6 3.6329 -2.9357 2.1381 9 7 4.0519 -1.5310 2.2267 10 6 5.5148 -1.4219 2.3050 11 6 5.9945 -2.0216 3.6016 12 1 5.2838 -2.4414 4.2980 13 6 7.3407 -2.0334 3.8992 14 7 8.2062 -1.5218 3.0514 15 14 7.9355 -2.7775 5.5061 16 1 6.7719 -3.2821 6.2786 17 1 8.8637 -3.9003 5.2182 18 1 8.6437 -1.7408 6.2994 19 6 3.5253 -0.7479 1.1016 20 1 -0.3633 0.4513 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3432 -0.0708 24 1 1.5898 1.9163 -0.8524 25 1 1.7044 1.8723 0.9233 26 1 1.8191 -2.6481 0.1007 27 1 0.4173 -2.2347 1.1188 28 1 1.7606 -2.6085 3.1536 29 1 1.7944 -4.0604 2.1239 30 1 4.0640 -3.4961 2.9676 31 1 3.9788 -3.3591 1.1952 32 1 5.9643 -1.9574 1.4687 33 1 5.8037 -0.3718 2.2615 34 1 9.1533 -1.5305 3.2606 35 1 3.8781 0.2806 1.1784 36 1 3.8715 -1.1816 0.1636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082681507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:01 Heat of formation + Delta-G solvation = -17.777908 kcal Electronic energy + Delta-G solvation = -14789.022057 eV Core-core repulsion = 12499.938223 eV Total energy + Delta-G solvation = -2289.083834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39304 -37.56540 -35.09294 -33.49133 -30.96412 -29.21730 -28.30484 -25.60172 -24.87696 -23.16375 -21.95878 -20.54060 -18.47984 -17.37513 -16.45265 -16.22111 -15.78315 -15.58637 -15.46458 -14.79735 -14.65333 -14.22964 -13.79253 -13.70569 -13.18057 -13.06701 -12.85564 -12.62894 -12.44115 -12.36803 -12.23516 -12.02266 -11.70238 -11.61890 -11.18731 -10.96055 -10.63787 -9.30063 -9.04922 -8.22096 -6.32832 1.40673 1.41366 1.55399 2.39207 2.84644 3.10381 3.44612 3.78434 3.97436 4.13887 4.30351 4.30740 4.43392 4.49644 4.60954 4.66482 4.73019 4.80546 4.81643 4.90335 4.98796 5.02440 5.06879 5.11638 5.17763 5.20727 5.29595 5.46809 5.63499 5.98628 6.08993 6.15434 6.33948 6.63322 6.83762 7.37163 8.89693 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050005 B = 0.007197 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.810098 B = 3889.548665 C = 4258.778816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.021 3.979 4 C 0.098 3.902 5 H 0.039 0.961 6 C -0.104 4.104 7 C -0.106 4.106 8 C 0.061 3.939 9 N -0.543 5.543 10 C 0.209 3.791 11 C -0.523 4.523 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.973 3.027 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.066 3.934 20 H 0.026 0.974 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.025 0.975 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.011 0.989 32 H -0.041 1.041 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.057 0.943 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 0.663 -4.238 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.280 5.280 3 C -0.127 4.127 4 C -0.011 4.011 5 H 0.057 0.943 6 C -0.141 4.141 7 C -0.145 4.145 8 C -0.067 4.067 9 N -0.268 5.268 10 C 0.083 3.917 11 C -0.561 4.561 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.798 3.202 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.063 4.063 20 H 0.045 0.955 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.029 0.971 32 H -0.023 1.023 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -15.075 0.669 -4.271 15.682 hybrid contribution 1.149 0.038 0.539 1.270 sum -13.926 0.707 -3.732 14.434 Atomic orbital electron populations 1.22480 0.85733 1.03169 1.01010 1.62000 1.09335 1.14042 1.42649 1.22442 1.00600 0.88605 1.01065 1.21513 0.92818 0.95312 0.91441 0.94337 1.21617 1.00923 0.93031 0.98574 1.21570 0.92821 1.01037 0.99034 1.22016 0.96675 0.88897 0.99088 1.61940 1.12091 1.11050 1.41740 1.19352 0.82655 0.94675 0.95041 1.21481 0.92306 1.38327 1.03963 0.91719 1.25975 0.96862 0.95949 1.01046 1.70105 1.02615 1.46965 1.38021 0.85274 0.78333 0.78015 0.78626 1.18564 1.20285 1.20343 1.22046 0.95238 0.97552 0.91457 0.95543 0.90014 0.90274 0.92520 0.89503 0.95627 0.91957 0.89435 0.91557 0.89197 0.91797 0.97065 1.02346 0.98126 0.92628 0.92446 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.21 127.69 1.18 1.64 16 2 N -0.56 -14.71 4.89 -922.96 -4.51 -19.22 16 3 C 0.02 0.52 9.11 127.69 1.16 1.68 16 4 C 0.10 3.03 2.11 44.97 0.09 3.12 16 5 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 6 C -0.10 -2.80 4.97 30.68 0.15 -2.64 16 7 C -0.11 -3.16 6.09 30.65 0.19 -2.97 16 8 C 0.06 2.47 5.30 86.32 0.46 2.93 16 9 N -0.54 -24.93 4.65 -900.94 -4.19 -29.11 16 10 C 0.21 11.74 4.72 85.56 0.40 12.14 16 11 C -0.52 -30.47 8.43 25.60 0.22 -30.26 16 12 H 0.06 3.69 7.14 -2.91 -0.02 3.66 16 13 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 14 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 15 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.07 2.59 4.36 86.33 0.38 2.97 16 20 H 0.03 0.50 8.14 -2.39 -0.02 0.49 16 21 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 22 H 0.08 1.40 6.36 -2.39 -0.02 1.38 16 23 H 0.06 1.59 6.26 -2.39 -0.01 1.57 16 24 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.87 6.55 -2.39 -0.02 1.85 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 2.79 6.72 -2.39 -0.02 2.77 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H -0.04 -2.51 8.12 -2.38 -0.02 -2.53 16 33 H 0.00 0.04 7.98 -2.39 -0.02 0.02 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.06 2.33 6.27 -2.39 -0.01 2.31 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -65.56 278.52 -0.68 -66.24 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.02 Total: 3.53 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 4.69 Total: -10.96 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -8.41 Total: -105.70 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.56 -0.68 -66.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082681507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.463 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds