Wall clock time and date at job start Sun Mar 29 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47805 * 111.00027 * 2 1 4 4 C 1.45863 * 112.92052 * 153.86259 * 3 2 1 5 5 C 1.54508 * 111.53286 * 61.36035 * 4 3 2 6 6 C 1.50516 * 108.82784 * 282.70803 * 5 4 3 7 7 H 1.09005 * 108.70974 * 331.40993 * 6 5 4 8 8 N 1.46892 * 108.80108 * 213.14399 * 6 5 4 9 9 C 1.46898 * 111.00173 * 151.55691 * 8 6 5 10 10 C 1.50707 * 109.47318 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99958 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00215 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99764 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46847 * 60.00176 * 14 12 10 16 16 H 1.48498 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47080 * 300.00528 * 14 12 10 18 18 C 1.54285 * 112.97161 * 92.24257 * 6 5 4 19 19 C 1.44268 * 111.00390 * 238.01423 * 2 1 3 20 20 H 1.09004 * 109.46662 * 56.04468 * 1 2 3 21 21 H 1.08999 * 109.47088 * 176.04706 * 1 2 3 22 22 H 1.08998 * 109.47060 * 296.05137 * 1 2 3 23 23 H 1.09000 * 108.79406 * 32.97716 * 3 2 1 24 24 H 1.08999 * 108.70304 * 274.68485 * 3 2 1 25 25 H 1.09002 * 109.05789 * 181.86841 * 4 3 2 26 26 H 1.09004 * 109.05566 * 300.85324 * 4 3 2 27 27 H 1.08998 * 109.57483 * 42.58549 * 5 4 3 28 28 H 1.09001 * 109.57633 * 162.96731 * 5 4 3 29 29 H 1.00906 * 110.99997 * 275.50457 * 8 6 5 30 30 H 1.08996 * 109.47544 * 299.99574 * 9 8 6 31 31 H 1.09000 * 109.47385 * 59.99356 * 9 8 6 32 32 H 0.96998 * 119.99874 * 179.97438 * 13 12 10 33 33 H 1.09000 * 108.91953 * 197.57796 * 18 6 5 34 34 H 1.09005 * 108.84547 * 78.97207 * 18 6 5 35 35 H 1.09002 * 108.97553 * 339.95802 * 19 2 1 36 36 H 1.08998 * 108.97834 * 98.66770 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3799 0.0000 4 6 3.3282 1.4780 0.5918 5 6 4.3614 0.6383 -0.1923 6 6 4.1834 -0.8119 0.1690 7 1 3.7883 -0.8737 1.1830 8 7 5.4944 -1.4734 0.1322 9 6 5.5385 -2.6072 1.0651 10 6 6.8954 -3.2596 0.9992 11 1 7.6497 -2.8706 0.3314 12 6 7.1741 -4.3525 1.7923 13 7 6.2556 -4.8259 2.6059 14 14 8.8562 -5.1608 1.7111 15 1 9.8992 -4.1715 2.0840 16 1 8.9007 -6.3070 2.6542 17 1 9.1059 -5.6464 0.3302 18 6 3.2247 -1.5564 -0.7835 19 6 1.9861 -0.7134 -1.1423 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3633 0.4513 0.9232 23 1 1.3164 2.0179 0.5617 24 1 2.0452 1.7364 -1.0290 25 1 3.6426 2.5217 0.5897 26 1 3.2869 1.1210 1.6209 27 1 4.2034 0.7714 -1.2625 28 1 5.3690 0.9588 0.0726 29 1 5.7250 -1.7673 -0.8052 30 1 5.3552 -2.2510 2.0788 31 1 4.7729 -3.3331 0.7912 32 1 6.4516 -5.5950 3.1636 33 1 2.8974 -2.4795 -0.3050 34 1 3.7609 -1.8045 -1.6996 35 1 1.2091 -1.3722 -1.5303 36 1 2.2582 0.0050 -1.9156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083417946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:20 Heat of formation + Delta-G solvation = -1.074068 kcal Electronic energy + Delta-G solvation = -14628.044999 eV Core-core repulsion = 12339.685499 eV Total energy + Delta-G solvation = -2288.359501 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.17217 -35.75715 -33.23363 -32.42733 -30.56613 -27.67176 -25.87317 -24.43605 -23.36325 -21.41760 -20.34741 -19.24844 -16.35057 -15.74447 -15.55153 -14.76491 -14.60248 -14.11318 -13.57680 -13.36619 -13.10705 -12.66813 -12.55807 -12.22543 -11.80777 -11.26501 -11.18932 -10.97514 -10.77066 -10.72593 -10.58107 -10.40799 -10.18538 -9.99491 -9.68149 -9.05890 -8.42239 -8.22692 -7.12304 -5.95645 -3.97417 3.37775 3.41317 3.44681 3.98308 4.48839 4.89679 5.03135 5.20648 5.30508 5.38782 5.39919 5.42580 5.48548 5.58982 5.73628 5.76118 5.83945 5.92738 6.02905 6.16378 6.23297 6.36370 6.53779 6.61017 6.85816 6.88182 7.15492 7.24340 7.42910 7.57496 7.87896 8.24274 8.53296 8.75885 9.12579 9.67074 11.15296 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054349 B = 0.006310 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.068183 B = 4436.674963 C = 4628.652600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.534 5.534 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.102 4.102 6 C 0.095 3.905 7 H 0.074 0.926 8 N -0.689 5.689 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.060 0.940 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.135 4.135 19 C 0.061 3.939 20 H 0.020 0.980 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.324 0.676 30 H 0.026 0.974 31 H -0.014 1.014 32 H 0.261 0.739 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 10.604 -6.605 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C -0.067 4.067 4 C -0.157 4.157 5 C -0.141 4.141 6 C -0.016 4.016 7 H 0.092 0.908 8 N -0.318 5.318 9 C 0.068 3.932 10 C -0.553 4.553 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.175 4.175 19 C -0.069 4.069 20 H 0.039 0.961 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.044 0.956 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.555 10.644 -5.565 15.348 hybrid contribution -0.049 -0.893 -1.161 1.465 sum -9.604 9.752 -6.726 15.251 Atomic orbital electron populations 1.22451 0.87554 1.01686 1.00355 1.61562 1.07039 1.14193 1.42995 1.21038 0.97325 0.88892 0.99436 1.20595 0.94263 0.99671 1.01135 1.21414 0.99090 0.95118 0.98435 1.21254 0.88611 0.92762 0.99008 0.90823 1.60995 1.26063 1.33044 1.11721 1.19547 0.96038 0.86098 0.91481 1.21203 0.98657 1.12289 1.23105 0.92160 1.24991 0.97164 0.97027 0.95424 1.69963 1.33591 1.24836 1.25406 0.86567 0.84384 0.78743 0.77715 1.20197 1.21390 1.20349 1.22698 0.95782 0.99243 0.99765 1.21906 0.97255 0.96961 0.90758 0.96110 0.91468 0.91509 0.92031 0.94987 0.91979 0.91117 0.93365 0.90643 0.85933 0.95599 0.99640 0.92953 0.92001 0.92454 0.92516 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.22 60.06 0.55 0.85 16 2 N -0.53 -7.22 4.48 -247.88 -1.11 -8.33 16 3 C 0.06 0.73 4.96 -6.70 -0.03 0.70 16 4 C -0.12 -1.57 5.53 -29.32 -0.16 -1.74 16 5 C -0.10 -1.59 5.28 -27.18 -0.14 -1.73 16 6 C 0.09 1.75 2.11 -68.29 -0.14 1.61 16 7 H 0.07 1.54 6.96 -51.93 -0.36 1.18 16 8 N -0.69 -15.31 6.06 -108.60 -0.66 -15.96 16 9 C 0.20 5.30 5.21 -4.97 -0.03 5.27 16 10 C -0.51 -14.98 9.32 -34.44 -0.32 -15.30 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 14 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.13 -2.25 5.45 -25.50 -0.14 -2.39 16 19 C 0.06 0.83 5.17 -4.67 -0.02 0.81 16 20 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 21 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 22 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 23 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 24 H 0.03 0.37 7.23 -51.93 -0.38 -0.01 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.05 7.58 -51.93 -0.39 0.65 16 27 H 0.05 0.69 7.14 -51.93 -0.37 0.32 16 28 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 29 H 0.32 6.91 8.17 -39.29 -0.32 6.59 16 30 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 31 H -0.01 -0.41 7.78 -51.93 -0.40 -0.81 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.06 1.16 7.91 -51.93 -0.41 0.74 16 34 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 35 H 0.06 0.72 7.43 -51.93 -0.39 0.33 16 36 H 0.04 0.48 6.50 -51.93 -0.34 0.14 16 LS Contribution 279.01 15.07 4.20 4.20 Total: -1.00 -30.56 279.01 -8.60 -39.16 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.22 Total: 1.00 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.54 Total: -10.40 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -1.03 Total: -51.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.56 -8.60 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083417946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.089 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds