Wall clock time and date at job start Sun Mar 29 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47805 * 111.00027 * 2 1 4 4 C 1.45863 * 112.92052 * 153.86259 * 3 2 1 5 5 C 1.54508 * 111.53286 * 61.36035 * 4 3 2 6 6 C 1.50516 * 108.82784 * 282.70803 * 5 4 3 7 7 H 1.09005 * 108.70974 * 331.40993 * 6 5 4 8 8 N 1.46892 * 108.80108 * 213.14399 * 6 5 4 9 9 C 1.46898 * 111.00173 * 151.55691 * 8 6 5 10 10 C 1.50707 * 109.47318 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99958 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00215 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99764 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46847 * 60.00176 * 14 12 10 16 16 H 1.48498 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47080 * 300.00528 * 14 12 10 18 18 C 1.54285 * 112.97161 * 92.24257 * 6 5 4 19 19 C 1.44268 * 111.00390 * 238.01423 * 2 1 3 20 20 H 1.09004 * 109.46662 * 56.04468 * 1 2 3 21 21 H 1.08999 * 109.47088 * 176.04706 * 1 2 3 22 22 H 1.08998 * 109.47060 * 296.05137 * 1 2 3 23 23 H 1.09000 * 108.79406 * 32.97716 * 3 2 1 24 24 H 1.08999 * 108.70304 * 274.68485 * 3 2 1 25 25 H 1.09002 * 109.05789 * 181.86841 * 4 3 2 26 26 H 1.09004 * 109.05566 * 300.85324 * 4 3 2 27 27 H 1.08998 * 109.57483 * 42.58549 * 5 4 3 28 28 H 1.09001 * 109.57633 * 162.96731 * 5 4 3 29 29 H 1.00906 * 110.99997 * 275.50457 * 8 6 5 30 30 H 1.08996 * 109.47544 * 299.99574 * 9 8 6 31 31 H 1.09000 * 109.47385 * 59.99356 * 9 8 6 32 32 H 0.96998 * 119.99874 * 179.97438 * 13 12 10 33 33 H 1.09000 * 108.91953 * 197.57796 * 18 6 5 34 34 H 1.09005 * 108.84547 * 78.97207 * 18 6 5 35 35 H 1.09002 * 108.97553 * 339.95802 * 19 2 1 36 36 H 1.08998 * 108.97834 * 98.66770 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3799 0.0000 4 6 3.3282 1.4780 0.5918 5 6 4.3614 0.6383 -0.1923 6 6 4.1834 -0.8119 0.1690 7 1 3.7883 -0.8737 1.1830 8 7 5.4944 -1.4734 0.1322 9 6 5.5385 -2.6072 1.0651 10 6 6.8954 -3.2596 0.9992 11 1 7.6497 -2.8706 0.3314 12 6 7.1741 -4.3525 1.7923 13 7 6.2556 -4.8259 2.6059 14 14 8.8562 -5.1608 1.7111 15 1 9.8992 -4.1715 2.0840 16 1 8.9007 -6.3070 2.6542 17 1 9.1059 -5.6464 0.3302 18 6 3.2247 -1.5564 -0.7835 19 6 1.9861 -0.7134 -1.1423 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3633 0.4513 0.9232 23 1 1.3164 2.0179 0.5617 24 1 2.0452 1.7364 -1.0290 25 1 3.6426 2.5217 0.5897 26 1 3.2869 1.1210 1.6209 27 1 4.2034 0.7714 -1.2625 28 1 5.3690 0.9588 0.0726 29 1 5.7250 -1.7673 -0.8052 30 1 5.3552 -2.2510 2.0788 31 1 4.7729 -3.3331 0.7912 32 1 6.4516 -5.5950 3.1636 33 1 2.8974 -2.4795 -0.3050 34 1 3.7609 -1.8045 -1.6996 35 1 1.2091 -1.3722 -1.5303 36 1 2.2582 0.0050 -1.9156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083417946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:20 Heat of formation + Delta-G solvation = -23.159039 kcal Electronic energy + Delta-G solvation = -14629.002676 eV Core-core repulsion = 12339.685499 eV Total energy + Delta-G solvation = -2289.317177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35152 -37.32731 -35.02060 -33.93569 -32.18344 -29.10911 -27.58954 -25.56080 -24.83281 -23.39799 -21.47498 -20.66132 -18.49858 -16.96312 -16.75529 -16.62999 -15.81910 -15.64795 -15.07757 -14.75597 -14.46169 -14.16879 -13.95509 -13.54682 -13.41875 -12.96559 -12.80350 -12.58730 -12.31334 -12.12930 -11.94449 -11.91799 -11.65862 -11.45945 -11.29374 -11.07341 -10.65523 -9.25499 -8.97667 -8.21201 -6.33475 1.40706 1.45193 1.53219 2.40734 3.01997 3.11179 3.61311 3.86244 3.99838 4.12655 4.26880 4.32943 4.45764 4.48985 4.60879 4.67026 4.77067 4.84924 4.91356 4.99964 5.02550 5.10960 5.13014 5.20500 5.27631 5.38956 5.51138 5.54965 5.67200 6.05499 6.21127 6.26458 6.51122 6.78239 6.94485 7.37802 8.90236 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054349 B = 0.006310 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.068183 B = 4436.674963 C = 4628.652600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.563 5.563 3 C 0.059 3.941 4 C -0.112 4.112 5 C -0.096 4.096 6 C 0.098 3.902 7 H 0.040 0.960 8 N -0.688 5.688 9 C 0.214 3.786 10 C -0.538 4.538 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.936 5.936 14 Si 0.976 3.024 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.265 1.265 18 C -0.131 4.131 19 C 0.069 3.931 20 H 0.039 0.961 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.331 0.669 30 H -0.010 1.010 31 H -0.042 1.042 32 H 0.265 0.735 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 11.704 -7.965 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.287 5.287 3 C -0.068 4.068 4 C -0.151 4.151 5 C -0.134 4.134 6 C -0.012 4.012 7 H 0.059 0.941 8 N -0.318 5.318 9 C 0.086 3.914 10 C -0.576 4.576 11 H 0.083 0.917 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.800 3.200 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.171 4.171 19 C -0.061 4.061 20 H 0.057 0.943 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.008 0.992 31 H -0.025 1.025 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.422 11.770 -6.943 16.598 hybrid contribution -0.147 -1.214 -0.704 1.411 sum -9.569 10.556 -7.646 16.170 Atomic orbital electron populations 1.22462 0.85802 1.02032 1.01526 1.61475 1.08839 1.15238 1.43191 1.21056 0.96696 0.88474 1.00527 1.20574 0.94595 1.00471 0.99417 1.21326 0.99337 0.92748 0.99971 1.21319 0.87146 0.94735 0.98000 0.94112 1.60923 1.28853 1.30736 1.11244 1.19133 0.94809 0.86719 0.90731 1.21569 0.99360 1.13040 1.23642 0.91698 1.26017 1.01744 0.97525 0.94620 1.70109 1.36069 1.25354 1.26084 0.85340 0.78650 0.77661 0.78345 1.19252 1.20737 1.18965 1.22609 0.97115 0.98342 0.98997 1.21777 0.95892 0.97154 0.91232 0.94284 0.91714 0.90808 0.90166 0.93381 0.89365 0.93404 0.91392 0.91901 0.85152 0.99181 1.02477 0.92639 0.95168 0.91773 0.91335 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.22 127.69 1.18 1.75 16 2 N -0.56 -14.31 4.48 -938.14 -4.21 -18.51 16 3 C 0.06 1.28 4.96 83.94 0.42 1.69 16 4 C -0.11 -2.81 5.53 28.92 0.16 -2.65 16 5 C -0.10 -2.87 5.28 30.30 0.16 -2.71 16 6 C 0.10 3.73 2.11 44.55 0.09 3.82 16 7 H 0.04 1.81 6.96 -2.38 -0.02 1.79 16 8 N -0.69 -31.48 6.06 -497.50 -3.02 -34.50 16 9 C 0.21 12.21 5.21 85.56 0.45 12.65 16 10 C -0.54 -32.02 9.32 25.60 0.24 -31.78 16 11 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 12 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 13 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 14 Si 0.98 45.46 29.54 68.60 2.03 47.49 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 18 C -0.13 -4.40 5.45 31.39 0.17 -4.23 16 19 C 0.07 1.77 5.17 87.16 0.45 2.23 16 20 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 21 H 0.06 1.27 7.89 -2.39 -0.02 1.25 16 22 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 23 H 0.08 1.45 7.79 -2.39 -0.02 1.44 16 24 H 0.05 0.91 7.23 -2.39 -0.02 0.90 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.41 7.58 -2.38 -0.02 1.39 16 27 H 0.07 1.78 7.14 -2.39 -0.02 1.77 16 28 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16 29 H 0.33 14.30 8.17 -89.69 -0.73 13.57 16 30 H -0.01 -0.63 8.04 -2.39 -0.02 -0.65 16 31 H -0.04 -2.60 7.78 -2.39 -0.02 -2.62 16 32 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.03 1.17 7.91 -2.39 -0.02 1.16 16 34 H 0.06 2.04 7.70 -2.38 -0.02 2.02 16 35 H 0.07 1.60 7.43 -2.39 -0.02 1.58 16 36 H 0.05 1.23 6.50 -2.39 -0.02 1.21 16 Total: -1.00 -67.40 279.01 -0.83 -68.24 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.30 Total: 14.55 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 3.78 Total: -18.83 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -6.94 Total: -111.45 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.40 -0.83 -68.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083417946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.079 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds