Wall clock time and date at job start Sun Mar 29 2020 21:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29314 * 126.06391 * 2 1 4 4 N 1.26103 * 117.96592 * 180.02562 * 3 2 1 5 5 C 1.30240 * 117.62286 * 0.02562 * 4 3 2 6 6 N 1.38694 * 126.16999 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00398 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99643 * 0.02562 * 6 5 4 9 9 C 1.50691 * 109.47393 * 90.00178 * 8 6 5 10 10 H 1.08000 * 119.99979 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00156 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00201 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00443 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46974 * 89.99679 * 13 11 9 15 15 H 1.48494 * 109.47661 * 210.00369 * 13 11 9 16 16 H 1.48505 * 109.46989 * 330.00240 * 13 11 9 17 17 S 1.76481 * 126.06290 * 180.02562 * 2 1 3 18 18 H 1.08994 * 109.47551 * 90.01492 * 1 2 3 19 19 H 1.08999 * 109.46842 * 210.02273 * 1 2 3 20 20 H 1.09007 * 109.46697 * 330.01556 * 1 2 3 21 21 H 1.08999 * 109.46656 * 89.99871 * 7 6 5 22 22 H 1.08995 * 109.47259 * 210.00051 * 7 6 5 23 23 H 1.09001 * 109.46601 * 330.00256 * 7 6 5 24 24 H 1.09004 * 109.46498 * 209.99827 * 8 6 5 25 25 H 1.09000 * 109.47194 * 329.99818 * 8 6 5 26 26 H 0.97004 * 120.00438 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5168 0.8677 -0.0005 5 6 3.9521 -0.3598 -0.0015 6 7 5.2809 -0.7571 -0.0027 7 6 5.6194 -2.1825 -0.0043 8 6 6.3461 0.2488 -0.0023 9 6 6.7122 0.5922 1.4185 10 1 6.2022 0.1099 2.2393 11 6 7.6983 1.5223 1.6708 12 7 8.3191 2.1100 0.6714 13 14 8.1518 1.9486 3.4320 14 1 9.2326 1.0431 3.8979 15 1 8.6229 3.3554 3.4953 16 1 6.9601 1.7861 4.3031 17 16 2.5460 -1.4266 -0.0006 18 1 -0.3634 -0.0003 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5136 21 1 5.7027 -2.5349 -1.0324 22 1 6.5695 -2.3308 0.5088 23 1 4.8377 -2.7420 0.5094 24 1 7.2210 -0.1485 -0.5171 25 1 5.9990 1.1458 -0.5151 26 1 9.0131 2.7641 0.8488 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083583565.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:27 Heat of formation + Delta-G solvation = 64.352798 kcal Electronic energy + Delta-G solvation = -11890.009012 eV Core-core repulsion = 9710.147404 eV Total energy + Delta-G solvation = -2179.861608 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.11762 -36.58180 -32.78602 -31.96364 -28.34022 -28.08750 -25.33307 -23.98870 -22.07854 -18.76129 -18.37078 -16.61199 -16.02732 -15.14435 -14.78704 -14.02940 -13.78223 -13.41095 -12.70179 -12.67103 -12.32005 -12.30049 -11.96925 -11.33228 -11.03196 -10.69375 -10.31601 -10.16600 -9.76667 -9.38203 -9.22971 -9.00604 -8.52113 -7.10550 -6.11515 -4.19236 1.28939 1.36627 1.89485 3.26263 3.33569 3.37114 3.46503 3.56604 4.37898 4.82900 5.21472 5.32037 5.41780 5.60965 5.68890 5.79384 5.93318 5.98729 6.23773 6.71448 7.22549 7.57295 7.79356 7.86230 8.07838 8.83040 9.45765 9.53580 10.94702 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.041863 B = 0.008643 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.686895 B = 3238.786965 C = 3528.022712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.037 4.037 3 N -0.217 5.217 4 N -0.342 5.342 5 C 0.337 3.663 6 N -0.546 5.546 7 C 0.092 3.908 8 C 0.253 3.747 9 C -0.532 4.532 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.901 3.099 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.274 1.274 17 S -0.042 6.042 18 H 0.076 0.924 19 H 0.073 0.927 20 H 0.084 0.916 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.966 -8.778 -1.683 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.323 4.323 3 N -0.052 5.052 4 N -0.191 5.191 5 C -0.035 4.035 6 N -0.260 5.260 7 C -0.052 4.052 8 C 0.133 3.867 9 C -0.571 4.571 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.728 3.272 14 H -0.206 1.206 15 H -0.209 1.209 16 H -0.198 1.198 17 S 0.193 5.807 18 H 0.095 0.905 19 H 0.091 0.909 20 H 0.103 0.897 21 H 0.073 0.927 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.488 -8.403 -1.735 12.792 hybrid contribution 0.446 0.174 1.012 1.120 sum -9.041 -8.229 -0.723 12.247 Atomic orbital electron populations 1.20083 0.84985 1.03390 1.02981 1.28868 1.01351 0.88020 1.14021 1.70640 0.97304 1.27000 1.10258 1.71400 1.04063 1.14667 1.28963 1.26914 0.91080 0.89977 0.95540 1.46820 1.00092 1.07671 1.71415 1.21824 1.02439 0.79570 1.01346 1.19606 0.82810 0.86181 0.98132 1.21373 1.19833 1.24044 0.91868 0.92342 1.24907 0.95827 0.95379 0.97637 1.69921 1.24765 1.27485 1.30849 0.86453 0.78612 0.77781 0.84354 1.20577 1.20924 1.19849 1.85321 1.02619 1.14331 1.78430 0.90515 0.90852 0.89721 0.92732 0.89318 0.92287 0.94080 0.93108 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.61 10.51 36.01 0.38 -0.23 15 2 C -0.04 -0.63 7.79 -13.33 -0.10 -0.73 15 3 N -0.22 -4.66 11.55 33.57 0.39 -4.27 15 4 N -0.34 -8.24 10.94 31.00 0.34 -7.90 15 5 C 0.34 7.27 8.04 -87.15 -0.70 6.56 15 6 N -0.55 -11.70 2.96 -183.36 -0.54 -12.24 15 7 C 0.09 1.48 10.47 59.85 0.63 2.10 15 8 C 0.25 6.45 5.31 -5.19 -0.03 6.42 15 9 C -0.53 -14.80 9.39 -34.45 -0.32 -15.13 15 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 15 11 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 12 N -0.89 -26.00 13.29 55.43 0.74 -25.26 15 13 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 17 S -0.04 -0.69 22.25 -107.50 -2.39 -3.08 15 18 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.08 0.92 8.14 -51.92 -0.42 0.49 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.09 1.40 8.07 -51.93 -0.42 0.98 15 23 H 0.06 0.84 7.16 -51.93 -0.37 0.47 15 24 H 0.04 1.05 8.07 -51.93 -0.42 0.63 15 25 H 0.05 1.45 7.67 -51.93 -0.40 1.05 15 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 248.47 15.07 3.74 3.74 Total: -1.00 -31.75 248.47 -5.84 -37.59 By element: Atomic # 1 Polarization: -3.16 SS G_CDS: -2.84 Total: -6.01 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.25 Total: 0.74 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.92 Total: -49.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.39 Total: -3.08 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.75 -5.84 -37.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083583565.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.947 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds