Wall clock time and date at job start Sun Mar 29 2020 21:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29314 * 126.06391 * 2 1 4 4 N 1.26103 * 117.96592 * 180.02562 * 3 2 1 5 5 C 1.30240 * 117.62286 * 0.02562 * 4 3 2 6 6 N 1.38694 * 126.16999 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00398 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99643 * 0.02562 * 6 5 4 9 9 C 1.50691 * 109.47393 * 90.00178 * 8 6 5 10 10 H 1.08000 * 119.99979 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00156 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00201 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00443 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46974 * 89.99679 * 13 11 9 15 15 H 1.48494 * 109.47661 * 210.00369 * 13 11 9 16 16 H 1.48505 * 109.46989 * 330.00240 * 13 11 9 17 17 S 1.76481 * 126.06290 * 180.02562 * 2 1 3 18 18 H 1.08994 * 109.47551 * 90.01492 * 1 2 3 19 19 H 1.08999 * 109.46842 * 210.02273 * 1 2 3 20 20 H 1.09007 * 109.46697 * 330.01556 * 1 2 3 21 21 H 1.08999 * 109.46656 * 89.99871 * 7 6 5 22 22 H 1.08995 * 109.47259 * 210.00051 * 7 6 5 23 23 H 1.09001 * 109.46601 * 330.00256 * 7 6 5 24 24 H 1.09004 * 109.46498 * 209.99827 * 8 6 5 25 25 H 1.09000 * 109.47194 * 329.99818 * 8 6 5 26 26 H 0.97004 * 120.00438 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5168 0.8677 -0.0005 5 6 3.9521 -0.3598 -0.0015 6 7 5.2809 -0.7571 -0.0027 7 6 5.6194 -2.1825 -0.0043 8 6 6.3461 0.2488 -0.0023 9 6 6.7122 0.5922 1.4185 10 1 6.2022 0.1099 2.2393 11 6 7.6983 1.5223 1.6708 12 7 8.3191 2.1100 0.6714 13 14 8.1518 1.9486 3.4320 14 1 9.2326 1.0431 3.8979 15 1 8.6229 3.3554 3.4953 16 1 6.9601 1.7861 4.3031 17 16 2.5460 -1.4266 -0.0006 18 1 -0.3634 -0.0003 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5136 21 1 5.7027 -2.5349 -1.0324 22 1 6.5695 -2.3308 0.5088 23 1 4.8377 -2.7420 0.5094 24 1 7.2210 -0.1485 -0.5171 25 1 5.9990 1.1458 -0.5151 26 1 9.0131 2.7641 0.8488 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083583565.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:27 Heat of formation + Delta-G solvation = 43.075310 kcal Electronic energy + Delta-G solvation = -11890.931673 eV Core-core repulsion = 9710.147404 eV Total energy + Delta-G solvation = -2180.784269 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.66525 -38.18520 -34.84725 -33.27995 -30.03068 -29.65239 -26.78098 -25.77142 -23.72147 -20.32814 -19.84717 -18.70086 -17.57810 -16.71828 -16.65235 -15.62032 -15.20000 -14.82045 -14.16702 -14.07223 -13.70748 -13.59499 -13.26680 -13.21623 -12.88372 -12.59329 -12.23300 -11.97180 -11.24391 -11.19098 -10.72562 -10.66022 -10.37363 -8.75562 -8.19564 -6.40135 -0.17555 -0.07349 0.45522 1.35375 1.38545 1.48422 1.91580 2.06562 2.37421 3.05203 3.57210 3.98962 4.27934 4.48199 4.50476 4.72464 4.77653 4.83234 4.96725 5.13299 5.21971 5.57817 5.93161 6.00827 6.15532 6.68578 7.29269 8.02958 8.81495 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.041863 B = 0.008643 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.686895 B = 3238.786965 C = 3528.022712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.018 4.018 3 N -0.267 5.267 4 N -0.398 5.398 5 C 0.299 3.701 6 N -0.562 5.562 7 C 0.089 3.911 8 C 0.272 3.728 9 C -0.543 4.543 10 H 0.050 0.950 11 C 0.015 3.985 12 N -0.924 5.924 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.277 1.277 17 S 0.044 5.956 18 H 0.102 0.898 19 H 0.104 0.896 20 H 0.093 0.907 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.009 0.991 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -10.509 -0.941 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.305 4.305 3 N -0.101 5.101 4 N -0.246 5.246 5 C -0.073 4.073 6 N -0.277 5.277 7 C -0.053 4.053 8 C 0.149 3.851 9 C -0.582 4.582 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.564 5.564 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.202 1.202 17 S 0.279 5.721 18 H 0.120 0.880 19 H 0.122 0.878 20 H 0.111 0.889 21 H 0.097 0.903 22 H 0.106 0.894 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.027 0.973 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.192 -10.161 -0.998 15.149 hybrid contribution 0.741 0.629 0.731 1.216 sum -10.451 -9.532 -0.267 14.148 Atomic orbital electron populations 1.20449 0.80834 1.05333 1.05194 1.30060 1.03714 0.87782 1.08957 1.70614 0.96916 1.28818 1.13704 1.71327 1.05822 1.17286 1.30139 1.27120 0.92361 0.91323 0.96529 1.46650 0.99557 1.08611 1.72891 1.22055 1.03066 0.76936 1.03198 1.18996 0.83653 0.86018 0.96418 1.21611 1.19740 1.24160 0.92711 0.93209 1.25761 0.95783 0.95219 1.01744 1.70028 1.25351 1.28079 1.32915 0.85444 0.78430 0.77838 0.79258 1.18738 1.20536 1.20194 1.84909 0.98631 1.11588 1.76929 0.87965 0.87760 0.88865 0.90344 0.89449 0.90223 0.94747 0.97264 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.51 71.24 0.75 -0.33 15 2 C -0.02 -0.58 7.79 88.48 0.69 0.11 15 3 N -0.27 -11.45 11.55 -47.71 -0.55 -12.00 15 4 N -0.40 -19.66 10.94 -55.85 -0.61 -20.27 15 5 C 0.30 12.92 8.04 179.13 1.44 14.36 15 6 N -0.56 -24.36 2.96 -734.01 -2.18 -26.54 15 7 C 0.09 2.76 10.47 127.77 1.34 4.10 15 8 C 0.27 14.44 5.31 85.63 0.45 14.90 15 9 C -0.54 -31.03 9.39 25.60 0.24 -30.79 15 10 H 0.05 2.86 7.81 -2.91 -0.02 2.84 15 11 C 0.01 0.84 5.46 84.65 0.46 1.30 15 12 N -0.92 -55.22 13.29 21.45 0.28 -54.93 15 13 Si 0.97 44.92 29.54 68.60 2.03 46.95 15 14 H -0.26 -11.41 7.11 99.48 0.71 -10.71 15 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 17 S 0.04 1.33 22.25 -56.49 -1.26 0.08 15 18 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 19 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.09 1.70 8.14 -2.38 -0.02 1.68 15 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.09 2.69 8.07 -2.39 -0.02 2.67 15 23 H 0.08 2.08 7.16 -2.39 -0.02 2.07 15 24 H 0.03 1.84 8.07 -2.39 -0.02 1.82 15 25 H 0.01 0.56 7.67 -2.39 -0.02 0.54 15 26 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 Total: -1.00 -71.51 248.47 4.26 -67.24 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: 1.18 Total: -4.17 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.37 Total: 3.64 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -3.05 Total: -113.74 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.26 Total: 0.08 kcal Total: -71.51 4.26 -67.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083583565.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.316 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds