Wall clock time and date at job start Sun Mar 29 2020 21:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00244 * 2 1 4 4 C 1.50704 * 109.47171 * 293.94642 * 3 2 1 5 5 H 1.08008 * 119.99621 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00015 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99870 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47047 * 60.00154 * 8 6 4 10 10 H 1.48504 * 109.46779 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47355 * 299.99875 * 8 6 4 12 12 C 1.46898 * 110.99609 * 123.95263 * 2 1 3 13 13 C 1.53007 * 109.47390 * 71.60361 * 12 2 1 14 14 H 1.08998 * 110.33050 * 306.06015 * 13 12 2 15 15 C 1.54905 * 110.37112 * 68.32045 * 13 12 2 16 16 C 1.55261 * 101.59663 * 155.81939 * 15 13 12 17 17 C 1.54315 * 103.08488 * 324.48422 * 16 15 13 18 18 N 1.47446 * 107.23313 * 22.20698 * 17 16 15 19 19 C 1.46898 * 110.99704 * 123.25933 * 18 17 16 20 20 H 1.09006 * 109.46849 * 59.96329 * 1 2 3 21 21 H 1.08997 * 109.47401 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47428 * 299.97160 * 1 2 3 23 23 H 1.09000 * 109.47565 * 53.95091 * 3 2 1 24 24 H 1.09004 * 109.47100 * 173.95131 * 3 2 1 25 25 H 0.97000 * 119.99589 * 180.02562 * 7 6 4 26 26 H 1.09008 * 109.47253 * 191.60439 * 12 2 1 27 27 H 1.09003 * 109.47252 * 311.60356 * 12 2 1 28 28 H 1.09005 * 110.98579 * 273.98793 * 15 13 12 29 29 H 1.08993 * 110.99222 * 37.80565 * 15 13 12 30 30 H 1.09000 * 110.73732 * 206.04900 * 16 15 13 31 31 H 1.09001 * 110.75590 * 82.92790 * 16 15 13 32 32 H 1.09001 * 109.89006 * 262.80229 * 17 16 15 33 33 H 1.08999 * 109.88867 * 141.61141 * 17 16 15 34 34 H 1.09001 * 109.46967 * 295.76448 * 19 18 17 35 35 H 1.08998 * 109.47716 * 55.77050 * 19 18 17 36 36 H 1.09001 * 109.46970 * 175.77185 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6372 2.0470 -1.2985 5 1 1.0742 1.5113 -2.0486 6 6 2.0271 3.3493 -1.5286 7 7 2.7121 4.0018 -0.6151 8 14 1.5822 4.1870 -3.1379 9 1 0.1050 4.2234 -3.2852 10 1 2.1135 5.5737 -3.1375 11 1 2.1741 3.4300 -4.2702 12 6 1.9954 -0.7660 1.1376 13 6 1.7531 -2.2585 0.9034 14 1 0.6988 -2.4433 0.6974 15 6 2.6293 -2.7698 -0.2672 16 6 2.7364 -4.2835 0.0612 17 6 2.7903 -4.3035 1.6033 18 7 2.1930 -3.0417 2.0777 19 6 1.0700 -3.3007 2.9885 20 1 -0.3633 0.5144 -0.8897 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 1.5612 1.9274 0.8309 24 1 3.0798 1.3443 0.1083 25 1 2.9861 4.9181 -0.7768 26 1 3.0654 -0.5825 1.2353 27 1 1.4885 -0.4545 2.0510 28 1 2.1333 -2.6104 -1.2247 29 1 3.6117 -2.2979 -0.2547 30 1 3.6475 -4.7067 -0.3619 31 1 1.8595 -4.8203 -0.3008 32 1 3.8257 -4.3722 1.9372 33 1 2.2188 -5.1503 1.9833 34 1 0.2727 -3.8097 2.4468 35 1 1.4079 -3.9290 3.8126 36 1 0.6959 -2.3555 3.3820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086188583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:01 Heat of formation + Delta-G solvation = 5.268169 kcal Electronic energy + Delta-G solvation = -14605.589008 eV Core-core repulsion = 12317.504527 eV Total energy + Delta-G solvation = -2288.084481 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04889 -36.13238 -32.55267 -31.85109 -29.85399 -27.04844 -25.99527 -25.28778 -23.27976 -21.01006 -20.39488 -19.38868 -16.36242 -16.02144 -15.23045 -14.70964 -14.35010 -14.06220 -13.77064 -13.24288 -13.02610 -12.77994 -12.34353 -11.92309 -11.67897 -11.38835 -11.13751 -10.94407 -10.90259 -10.83121 -10.64190 -10.53865 -10.32143 -10.21167 -9.75833 -9.16685 -8.39453 -8.19182 -7.16022 -5.98462 -3.99747 3.35820 3.39684 3.42608 4.03994 4.47292 4.78839 4.92262 5.10566 5.26080 5.37244 5.41651 5.44889 5.48434 5.67176 5.69951 5.88769 5.91164 5.99694 6.11378 6.17406 6.27077 6.39862 6.46079 6.50041 6.59000 6.77434 7.13415 7.24282 7.37125 7.41917 7.84625 8.14882 8.26495 8.61194 9.07738 9.64120 11.12455 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052860 B = 0.006478 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.574571 B = 4321.342482 C = 4460.594759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.195 3.805 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.073 3.927 13 C 0.078 3.922 14 H 0.052 0.948 15 C -0.107 4.107 16 C -0.147 4.147 17 C 0.045 3.955 18 N -0.535 5.535 19 C 0.024 3.976 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.010 0.990 23 H -0.010 1.010 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.072 0.928 27 H 0.021 0.979 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -14.521 3.784 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.264 5.264 3 C 0.070 3.930 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.056 4.056 13 C -0.030 4.030 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.185 4.185 17 C -0.083 4.083 18 N -0.259 5.259 19 C -0.125 4.125 20 H 0.091 0.909 21 H 0.060 0.940 22 H 0.028 0.972 23 H 0.007 0.993 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.470 -14.284 3.685 14.824 hybrid contribution -1.132 0.496 -0.408 1.302 sum -2.602 -13.788 3.277 14.409 Atomic orbital electron populations 1.22225 0.89327 0.98789 1.00718 1.62008 1.06580 1.17747 1.40102 1.19719 0.95373 0.81487 0.96459 1.21138 1.34749 0.96891 1.01724 0.91962 1.24993 0.95366 0.97364 0.96947 1.69957 1.38413 1.11450 1.34090 0.86565 0.78636 0.78342 0.83867 1.20351 1.21382 1.20176 1.21884 1.00473 0.91196 0.92045 1.22594 0.97458 0.94347 0.88562 0.93009 1.22588 1.00801 0.92845 0.98309 1.22856 1.01736 0.98178 0.95771 1.22781 1.00253 0.90808 0.94489 1.63356 1.29414 1.16589 1.16587 1.22499 0.92231 1.01309 0.96473 0.90936 0.94012 0.97157 0.99262 0.95199 0.92910 0.90942 0.96106 0.90266 0.90553 0.91049 0.92041 0.90762 0.93283 0.95903 0.91814 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.19 60.07 0.55 1.32 16 2 N -0.54 -11.90 4.56 -244.36 -1.11 -13.02 16 3 C 0.19 5.20 4.71 -4.98 -0.02 5.18 16 4 C -0.51 -14.42 8.51 -34.44 -0.29 -14.71 16 5 H 0.06 1.74 7.10 -52.48 -0.37 1.37 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.07 1.40 4.73 -3.82 -0.02 1.39 16 13 C 0.08 1.25 2.48 -66.19 -0.16 1.08 16 14 H 0.05 0.83 6.11 -51.93 -0.32 0.52 16 15 C -0.11 -1.61 6.36 -24.53 -0.16 -1.76 16 16 C -0.15 -1.75 6.94 -24.84 -0.17 -1.92 16 17 C 0.04 0.54 6.90 -2.84 -0.02 0.52 16 18 N -0.53 -7.65 5.10 -231.60 -1.18 -8.83 16 19 C 0.02 0.29 9.17 60.06 0.55 0.84 16 20 H 0.07 1.53 6.86 -51.93 -0.36 1.17 16 21 H 0.04 0.71 6.47 -51.93 -0.34 0.38 16 22 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 23 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 24 H 0.03 0.85 7.87 -51.93 -0.41 0.44 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.07 1.46 7.73 -51.92 -0.40 1.06 16 27 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.23 7.99 -51.93 -0.42 0.81 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.52 7.58 -51.93 -0.39 0.12 16 34 H 0.02 0.26 8.01 -51.93 -0.42 -0.15 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -29.84 285.47 -8.47 -38.30 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.35 Total: -4.57 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 0.16 Total: -6.62 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.56 Total: -48.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.84 -8.47 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086188583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.573 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds