Wall clock time and date at job start Sun Mar 29 2020 21:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00244 * 2 1 4 4 C 1.50704 * 109.47171 * 293.94642 * 3 2 1 5 5 H 1.08008 * 119.99621 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00015 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99870 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47047 * 60.00154 * 8 6 4 10 10 H 1.48504 * 109.46779 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47355 * 299.99875 * 8 6 4 12 12 C 1.46898 * 110.99609 * 123.95263 * 2 1 3 13 13 C 1.53007 * 109.47390 * 71.60361 * 12 2 1 14 14 H 1.08998 * 110.33050 * 306.06015 * 13 12 2 15 15 C 1.54905 * 110.37112 * 68.32045 * 13 12 2 16 16 C 1.55261 * 101.59663 * 155.81939 * 15 13 12 17 17 C 1.54315 * 103.08488 * 324.48422 * 16 15 13 18 18 N 1.47446 * 107.23313 * 22.20698 * 17 16 15 19 19 C 1.46898 * 110.99704 * 123.25933 * 18 17 16 20 20 H 1.09006 * 109.46849 * 59.96329 * 1 2 3 21 21 H 1.08997 * 109.47401 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47428 * 299.97160 * 1 2 3 23 23 H 1.09000 * 109.47565 * 53.95091 * 3 2 1 24 24 H 1.09004 * 109.47100 * 173.95131 * 3 2 1 25 25 H 0.97000 * 119.99589 * 180.02562 * 7 6 4 26 26 H 1.09008 * 109.47253 * 191.60439 * 12 2 1 27 27 H 1.09003 * 109.47252 * 311.60356 * 12 2 1 28 28 H 1.09005 * 110.98579 * 273.98793 * 15 13 12 29 29 H 1.08993 * 110.99222 * 37.80565 * 15 13 12 30 30 H 1.09000 * 110.73732 * 206.04900 * 16 15 13 31 31 H 1.09001 * 110.75590 * 82.92790 * 16 15 13 32 32 H 1.09001 * 109.89006 * 262.80229 * 17 16 15 33 33 H 1.08999 * 109.88867 * 141.61141 * 17 16 15 34 34 H 1.09001 * 109.46967 * 295.76448 * 19 18 17 35 35 H 1.08998 * 109.47716 * 55.77050 * 19 18 17 36 36 H 1.09001 * 109.46970 * 175.77185 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6372 2.0470 -1.2985 5 1 1.0742 1.5113 -2.0486 6 6 2.0271 3.3493 -1.5286 7 7 2.7121 4.0018 -0.6151 8 14 1.5822 4.1870 -3.1379 9 1 0.1050 4.2234 -3.2852 10 1 2.1135 5.5737 -3.1375 11 1 2.1741 3.4300 -4.2702 12 6 1.9954 -0.7660 1.1376 13 6 1.7531 -2.2585 0.9034 14 1 0.6988 -2.4433 0.6974 15 6 2.6293 -2.7698 -0.2672 16 6 2.7364 -4.2835 0.0612 17 6 2.7903 -4.3035 1.6033 18 7 2.1930 -3.0417 2.0777 19 6 1.0700 -3.3007 2.9885 20 1 -0.3633 0.5144 -0.8897 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 1.5612 1.9274 0.8309 24 1 3.0798 1.3443 0.1083 25 1 2.9861 4.9181 -0.7768 26 1 3.0654 -0.5825 1.2353 27 1 1.4885 -0.4545 2.0510 28 1 2.1333 -2.6104 -1.2247 29 1 3.6117 -2.2979 -0.2547 30 1 3.6475 -4.7067 -0.3619 31 1 1.8595 -4.8203 -0.3008 32 1 3.8257 -4.3722 1.9372 33 1 2.2188 -5.1503 1.9833 34 1 0.2727 -3.8097 2.4468 35 1 1.4079 -3.9290 3.8126 36 1 0.6959 -2.3555 3.3820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086188583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:00 Heat of formation + Delta-G solvation = -15.660617 kcal Electronic energy + Delta-G solvation = -14606.496548 eV Core-core repulsion = 12317.504527 eV Total energy + Delta-G solvation = -2288.992021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24969 -37.85156 -34.69730 -32.89876 -31.31841 -29.02771 -27.46259 -26.48323 -25.03273 -22.50392 -21.72579 -20.75852 -18.50483 -17.29659 -16.68420 -16.30845 -16.01559 -15.63264 -15.11541 -14.64559 -14.35191 -14.15551 -13.87392 -13.41868 -13.31846 -12.90931 -12.72969 -12.58123 -12.44680 -12.27682 -12.12396 -11.96957 -11.82726 -11.68077 -11.42219 -11.20716 -10.60804 -9.29546 -8.99221 -8.19608 -6.30392 1.41804 1.45615 1.53502 2.40712 2.85676 3.12806 3.60499 3.74555 3.81811 4.10293 4.21386 4.38365 4.49068 4.53209 4.55222 4.56917 4.69489 4.81386 4.83026 4.92586 4.99961 5.02768 5.07874 5.14414 5.18270 5.28049 5.30716 5.41211 5.65036 6.01320 6.07346 6.19342 6.33300 6.63051 6.85747 7.39419 8.91701 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052860 B = 0.006478 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.574571 B = 4321.342482 C = 4460.594759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.066 0.934 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.973 3.027 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.078 3.922 13 C 0.088 3.912 14 H 0.056 0.944 15 C -0.111 4.111 16 C -0.136 4.136 17 C 0.044 3.956 18 N -0.554 5.554 19 C 0.023 3.977 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.006 0.994 23 H -0.042 1.042 24 H 0.001 0.999 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -16.201 2.983 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.192 1.192 12 C -0.051 4.051 13 C -0.020 4.020 14 H 0.074 0.926 15 C -0.150 4.150 16 C -0.174 4.174 17 C -0.083 4.083 18 N -0.279 5.279 19 C -0.125 4.125 20 H 0.079 0.921 21 H 0.095 0.905 22 H 0.024 0.976 23 H -0.024 1.024 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.333 -15.999 2.895 16.425 hybrid contribution -0.844 0.988 -0.077 1.302 sum -3.177 -15.011 2.817 15.600 Atomic orbital electron populations 1.22226 0.87722 1.00778 0.99887 1.61941 1.08004 1.15043 1.41606 1.19375 0.93480 0.83801 0.95018 1.21445 1.34960 0.97525 1.02257 0.91615 1.25969 0.94965 0.98063 1.00853 1.70098 1.39371 1.11902 1.36365 0.85390 0.78855 0.77098 0.78985 1.19123 1.20879 1.19196 1.21880 0.98974 0.93511 0.90771 1.22371 0.97814 0.91953 0.89874 0.92618 1.22548 0.99441 0.95405 0.97560 1.22813 1.03202 0.95601 0.95772 1.22857 1.00658 0.90299 0.94506 1.63252 1.30455 1.18000 1.16155 1.22540 0.91962 1.01291 0.96685 0.92128 0.90523 0.97579 1.02407 0.98129 0.92676 0.92879 0.96717 0.91056 0.92421 0.89497 0.90686 0.90427 0.91070 0.94834 0.89860 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.19 127.69 1.17 2.85 16 2 N -0.54 -24.35 4.56 -927.02 -4.22 -28.58 16 3 C 0.21 11.67 4.71 85.56 0.40 12.08 16 4 C -0.52 -30.34 8.51 25.60 0.22 -30.12 16 5 H 0.07 3.69 7.10 -2.91 -0.02 3.67 16 6 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 7 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.08 3.04 4.73 86.31 0.41 3.45 16 13 C 0.09 2.72 2.48 45.39 0.11 2.83 16 14 H 0.06 1.68 6.11 -2.39 -0.01 1.66 16 15 C -0.11 -3.23 6.36 32.02 0.20 -3.02 16 16 C -0.14 -2.85 6.94 31.82 0.22 -2.63 16 17 C 0.04 0.93 6.90 86.64 0.60 1.53 16 18 N -0.55 -14.85 5.10 -886.65 -4.52 -19.37 16 19 C 0.02 0.52 9.17 127.69 1.17 1.69 16 20 H 0.06 2.54 6.86 -2.38 -0.02 2.52 16 21 H 0.08 2.49 6.47 -2.39 -0.02 2.48 16 22 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 23 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 24 H 0.00 0.04 7.87 -2.39 -0.02 0.02 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.05 2.25 7.73 -2.38 -0.02 2.23 16 27 H 0.01 0.59 8.06 -2.39 -0.02 0.57 16 28 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.06 1.87 7.99 -2.39 -0.02 1.85 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.22 7.58 -2.39 -0.02 1.20 16 34 H 0.03 0.67 8.01 -2.39 -0.02 0.65 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.77 285.47 -0.45 -65.22 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.02 Total: 4.32 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.97 Total: -10.94 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -8.46 Total: -105.40 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.77 -0.45 -65.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086188583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.559 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds