Wall clock time and date at job start Sun Mar 29 2020 21:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00390 * 2 1 4 4 C 1.50698 * 109.47045 * 293.95827 * 3 2 1 5 5 H 1.08008 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00324 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99450 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00368 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46952 * 59.99908 * 8 6 4 10 10 H 1.48497 * 109.47335 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47368 * 300.00276 * 8 6 4 12 12 C 1.46895 * 111.00283 * 123.95670 * 2 1 3 13 13 C 1.53007 * 109.47137 * 75.73070 * 12 2 1 14 14 C 1.53114 * 109.52244 * 65.26534 * 13 12 2 15 15 C 1.53042 * 109.27531 * 177.56046 * 14 13 12 16 16 N 1.46841 * 109.52345 * 300.81640 * 15 14 13 17 17 C 1.46849 * 111.19803 * 61.74537 * 16 15 14 18 18 C 1.53037 * 109.52387 * 298.25899 * 17 16 15 19 19 H 1.08998 * 109.46518 * 299.90533 * 1 2 3 20 20 H 1.08994 * 109.47162 * 59.90172 * 1 2 3 21 21 H 1.08992 * 109.47054 * 179.90671 * 1 2 3 22 22 H 1.09000 * 109.46977 * 53.95691 * 3 2 1 23 23 H 1.08997 * 109.47426 * 173.95478 * 3 2 1 24 24 H 0.97000 * 119.99870 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47327 * 315.73310 * 12 2 1 26 26 H 1.09003 * 109.47346 * 195.72901 * 12 2 1 27 27 H 1.08999 * 109.57285 * 305.10667 * 13 12 2 28 28 H 1.09000 * 109.50735 * 57.61866 * 14 13 12 29 29 H 1.08998 * 109.50503 * 297.50146 * 14 13 12 30 30 H 1.09003 * 109.45817 * 180.80425 * 15 14 13 31 31 H 1.08999 * 109.46232 * 60.83924 * 15 14 13 32 32 H 1.00899 * 111.00247 * 185.84164 * 16 15 14 33 33 H 1.09001 * 109.45852 * 58.26835 * 17 16 15 34 34 H 1.08996 * 109.46800 * 178.24205 * 17 16 15 35 35 H 1.09001 * 109.50259 * 299.23962 * 18 17 16 36 36 H 1.08999 * 109.50379 * 179.12190 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0268 3.3495 -1.5285 7 7 2.7113 4.0022 -0.6145 8 14 1.5830 4.1869 -3.1382 9 1 0.1058 4.2231 -3.2864 10 1 2.1151 5.5732 -3.1382 11 1 2.1756 3.4297 -4.2699 12 6 1.9955 -0.7660 1.1375 13 6 1.8463 -2.2628 0.8572 14 6 2.7320 -2.6518 -0.3296 15 6 2.6254 -4.1600 -0.5665 16 7 3.0518 -4.8779 0.6414 17 6 2.1865 -4.5563 1.7835 18 6 2.2799 -3.0600 2.0905 19 1 -0.3632 0.5124 0.8908 20 1 -0.3633 0.5153 -0.8891 21 1 -0.3633 -1.0276 -0.0017 22 1 1.5612 1.9273 0.8309 23 1 3.0798 1.3444 0.1082 24 1 2.9859 4.9183 -0.7765 25 1 1.4387 -0.5078 2.0383 26 1 3.0492 -0.5264 1.2804 27 1 0.8057 -2.4888 0.6247 28 1 3.7675 -2.3899 -0.1123 29 1 2.4007 -2.1191 -1.2210 30 1 3.2659 -4.4425 -1.4020 31 1 1.5921 -4.4193 -0.7974 32 1 3.0812 -5.8733 0.4791 33 1 1.1553 -4.8137 1.5415 34 1 2.5082 -5.1266 2.6549 35 1 3.3083 -2.8044 2.3459 36 1 1.6257 -2.8189 2.9283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086702826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:09 Heat of formation + Delta-G solvation = -10.898506 kcal Electronic energy + Delta-G solvation = -14558.659982 eV Core-core repulsion = 12269.874462 eV Total energy + Delta-G solvation = -2288.785520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.71914 -36.24673 -32.91495 -31.79067 -30.57688 -27.33373 -26.52627 -24.20278 -22.75484 -21.70289 -19.98326 -19.27521 -16.56938 -16.22565 -14.90265 -14.50454 -14.44078 -14.26339 -14.01271 -13.28807 -13.14803 -12.70054 -12.21337 -12.00726 -11.84376 -11.37867 -11.05922 -10.95737 -10.80964 -10.74886 -10.55433 -10.22175 -10.07434 -9.95503 -9.68134 -9.12905 -8.42686 -8.40000 -7.15907 -5.99204 -4.00398 3.35395 3.39285 3.42287 4.27256 4.44921 4.87171 5.03378 5.11693 5.29987 5.36441 5.41557 5.59056 5.64176 5.72648 5.88181 5.93930 6.01203 6.18445 6.23224 6.26526 6.34391 6.37463 6.52427 6.70525 6.77528 6.84892 7.11052 7.34906 7.39397 7.40532 7.84233 8.14301 8.26564 8.61083 9.07176 9.63552 11.11741 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053625 B = 0.006325 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.022561 B = 4426.136915 C = 4576.749765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.539 5.539 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.060 3.940 13 C -0.080 4.080 14 C -0.102 4.102 15 C 0.057 3.943 16 N -0.691 5.691 17 C 0.061 3.939 18 C -0.114 4.114 19 H 0.009 0.991 20 H 0.071 0.929 21 H 0.042 0.958 22 H -0.011 1.011 23 H 0.029 0.971 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.336 0.664 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -14.836 3.367 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.069 4.069 13 C -0.099 4.099 14 C -0.139 4.139 15 C -0.072 4.072 16 N -0.322 5.322 17 C -0.068 4.068 18 C -0.152 4.152 19 H 0.028 0.972 20 H 0.090 0.910 21 H 0.061 0.939 22 H 0.006 0.994 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.152 0.848 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.123 -14.394 3.134 14.774 hybrid contribution -1.295 0.486 -0.264 1.408 sum -2.418 -13.907 2.870 14.405 Atomic orbital electron populations 1.22210 0.89256 0.98886 1.00609 1.62044 1.06607 1.17594 1.40029 1.19739 0.95297 0.81749 0.96449 1.21141 1.34740 0.96877 1.01726 0.91974 1.24995 0.95358 0.97365 0.96950 1.69955 1.38454 1.11463 1.34087 0.86563 0.78637 0.78338 0.83869 1.20343 1.21382 1.20173 1.22084 0.99938 0.92657 0.92193 1.21159 0.99205 0.94832 0.94718 1.21504 1.00242 0.92883 0.99306 1.22012 0.97771 0.95831 0.91628 1.60300 1.54394 1.11923 1.05614 1.21883 0.94191 0.97146 0.93615 1.21639 1.02084 0.93704 0.97788 0.97224 0.91026 0.93882 0.99355 0.95282 0.92919 0.96124 0.91564 0.92036 0.91697 0.89913 0.91179 0.95683 0.84752 0.95650 0.91321 0.91200 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.18 60.06 0.55 1.33 16 2 N -0.54 -11.80 4.20 -244.38 -1.03 -12.83 16 3 C 0.19 5.14 4.70 -4.98 -0.02 5.11 16 4 C -0.51 -14.43 8.51 -34.44 -0.29 -14.72 16 5 H 0.06 1.74 7.10 -52.48 -0.37 1.37 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.06 1.11 4.40 -3.82 -0.02 1.10 16 13 C -0.08 -1.23 2.31 -90.50 -0.21 -1.43 16 14 C -0.10 -1.56 5.24 -26.65 -0.14 -1.70 16 15 C 0.06 0.72 6.55 -3.83 -0.03 0.69 16 16 N -0.69 -8.13 6.85 -113.82 -0.78 -8.91 16 17 C 0.06 0.69 6.55 -3.83 -0.03 0.67 16 18 C -0.11 -1.48 5.38 -26.65 -0.14 -1.62 16 19 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 20 H 0.07 1.52 6.85 -51.93 -0.36 1.16 16 21 H 0.04 0.74 6.69 -51.93 -0.35 0.39 16 22 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 23 H 0.03 0.83 7.83 -51.93 -0.41 0.42 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 26 H 0.07 1.28 7.73 -51.93 -0.40 0.87 16 27 H 0.06 0.96 6.73 -51.93 -0.35 0.61 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.43 7.84 -51.93 -0.41 1.02 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.34 3.18 8.90 -39.29 -0.35 2.83 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 282.71 15.07 4.26 4.26 Total: -1.00 -29.88 282.71 -8.60 -38.48 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.34 Total: -2.34 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.42 Total: -9.11 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -1.07 Total: -48.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.88 -8.60 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.580 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds