Wall clock time and date at job start Sun Mar 29 2020 21:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00390 * 2 1 4 4 C 1.50698 * 109.47045 * 293.95827 * 3 2 1 5 5 H 1.08008 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00324 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99450 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00368 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46952 * 59.99908 * 8 6 4 10 10 H 1.48497 * 109.47335 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47368 * 300.00276 * 8 6 4 12 12 C 1.46895 * 111.00283 * 123.95670 * 2 1 3 13 13 C 1.53007 * 109.47137 * 75.73070 * 12 2 1 14 14 C 1.53114 * 109.52244 * 65.26534 * 13 12 2 15 15 C 1.53042 * 109.27531 * 177.56046 * 14 13 12 16 16 N 1.46841 * 109.52345 * 300.81640 * 15 14 13 17 17 C 1.46849 * 111.19803 * 61.74537 * 16 15 14 18 18 C 1.53037 * 109.52387 * 298.25899 * 17 16 15 19 19 H 1.08998 * 109.46518 * 299.90533 * 1 2 3 20 20 H 1.08994 * 109.47162 * 59.90172 * 1 2 3 21 21 H 1.08992 * 109.47054 * 179.90671 * 1 2 3 22 22 H 1.09000 * 109.46977 * 53.95691 * 3 2 1 23 23 H 1.08997 * 109.47426 * 173.95478 * 3 2 1 24 24 H 0.97000 * 119.99870 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47327 * 315.73310 * 12 2 1 26 26 H 1.09003 * 109.47346 * 195.72901 * 12 2 1 27 27 H 1.08999 * 109.57285 * 305.10667 * 13 12 2 28 28 H 1.09000 * 109.50735 * 57.61866 * 14 13 12 29 29 H 1.08998 * 109.50503 * 297.50146 * 14 13 12 30 30 H 1.09003 * 109.45817 * 180.80425 * 15 14 13 31 31 H 1.08999 * 109.46232 * 60.83924 * 15 14 13 32 32 H 1.00899 * 111.00247 * 185.84164 * 16 15 14 33 33 H 1.09001 * 109.45852 * 58.26835 * 17 16 15 34 34 H 1.08996 * 109.46800 * 178.24205 * 17 16 15 35 35 H 1.09001 * 109.50259 * 299.23962 * 18 17 16 36 36 H 1.08999 * 109.50379 * 179.12190 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0268 3.3495 -1.5285 7 7 2.7113 4.0022 -0.6145 8 14 1.5830 4.1869 -3.1382 9 1 0.1058 4.2231 -3.2864 10 1 2.1151 5.5732 -3.1382 11 1 2.1756 3.4297 -4.2699 12 6 1.9955 -0.7660 1.1375 13 6 1.8463 -2.2628 0.8572 14 6 2.7320 -2.6518 -0.3296 15 6 2.6254 -4.1600 -0.5665 16 7 3.0518 -4.8779 0.6414 17 6 2.1865 -4.5563 1.7835 18 6 2.2799 -3.0600 2.0905 19 1 -0.3632 0.5124 0.8908 20 1 -0.3633 0.5153 -0.8891 21 1 -0.3633 -1.0276 -0.0017 22 1 1.5612 1.9273 0.8309 23 1 3.0798 1.3444 0.1082 24 1 2.9859 4.9183 -0.7765 25 1 1.4387 -0.5078 2.0383 26 1 3.0492 -0.5264 1.2804 27 1 0.8057 -2.4888 0.6247 28 1 3.7675 -2.3899 -0.1123 29 1 2.4007 -2.1191 -1.2210 30 1 3.2659 -4.4425 -1.4020 31 1 1.5921 -4.4193 -0.7974 32 1 3.0812 -5.8733 0.4791 33 1 1.1553 -4.8137 1.5415 34 1 2.5082 -5.1266 2.6549 35 1 3.3083 -2.8044 2.3459 36 1 1.6257 -2.8189 2.9283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086702826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:08 Heat of formation + Delta-G solvation = -32.098435 kcal Electronic energy + Delta-G solvation = -14559.579280 eV Core-core repulsion = 12269.874462 eV Total energy + Delta-G solvation = -2289.704818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93542 -37.84464 -34.85210 -33.29608 -31.62382 -29.34692 -28.05739 -25.96771 -23.84449 -23.26329 -21.59850 -20.47562 -18.50173 -17.50197 -16.76738 -16.08336 -16.00150 -15.47339 -15.31482 -14.71993 -14.64613 -14.02888 -13.88974 -13.45986 -13.26931 -12.95999 -12.86037 -12.54406 -12.50137 -12.34845 -12.06208 -11.99483 -11.59000 -11.35335 -11.12485 -10.96870 -10.61358 -9.33304 -8.98659 -8.20421 -6.31064 1.40834 1.44573 1.52466 2.40444 3.11742 3.32195 3.38033 3.84816 3.97688 4.10591 4.37288 4.46574 4.47963 4.53293 4.56909 4.71792 4.74620 4.83393 4.89842 4.98762 5.02358 5.05649 5.12841 5.17116 5.29769 5.33982 5.46596 5.57726 5.65435 6.05038 6.13970 6.34143 6.60471 6.65366 6.85339 7.38805 8.90731 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053625 B = 0.006325 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.022561 B = 4426.136915 C = 4576.749765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.061 3.939 13 C -0.071 4.071 14 C -0.100 4.100 15 C 0.064 3.936 16 N -0.699 5.699 17 C 0.064 3.936 18 C -0.111 4.111 19 H 0.006 0.994 20 H 0.057 0.943 21 H 0.077 0.923 22 H -0.042 1.042 23 H 0.000 1.000 24 H 0.264 0.736 25 H 0.024 0.976 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.352 0.648 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 -16.446 2.813 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.267 5.267 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.068 4.068 13 C -0.090 4.090 14 C -0.138 4.138 15 C -0.065 4.065 16 N -0.332 5.332 17 C -0.066 4.066 18 C -0.149 4.149 19 H 0.025 0.975 20 H 0.075 0.925 21 H 0.096 0.904 22 H -0.024 1.024 23 H 0.018 0.982 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.171 0.829 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.057 -16.044 2.587 16.381 hybrid contribution -0.983 0.963 -0.031 1.377 sum -3.040 -15.080 2.556 15.594 Atomic orbital electron populations 1.22209 0.87752 1.00843 0.99747 1.61988 1.07969 1.14844 1.41900 1.19395 0.93411 0.84117 0.94952 1.21452 1.34939 0.97516 1.02319 0.91775 1.25959 0.94968 0.98059 1.00821 1.70093 1.39395 1.11908 1.36322 0.85402 0.78855 0.77125 0.79023 1.19127 1.20824 1.19280 1.22167 0.98762 0.94596 0.91232 1.21084 0.99512 0.92351 0.96018 1.21426 0.99022 0.95097 0.98267 1.21875 0.98522 0.93633 0.92481 1.60235 1.54609 1.13109 1.05245 1.21890 0.94730 0.95720 0.94224 1.21619 1.01655 0.94836 0.96826 0.97502 0.92453 0.90400 1.02391 0.98206 0.92683 0.95738 0.93208 0.91509 0.93444 0.92247 0.90282 0.94933 0.82868 0.94798 0.89257 0.92222 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 9.18 127.69 1.17 2.86 16 2 N -0.54 -24.22 4.20 -927.08 -3.89 -28.11 16 3 C 0.21 11.52 4.70 85.56 0.40 11.92 16 4 C -0.52 -30.44 8.51 25.60 0.22 -30.22 16 5 H 0.06 3.62 7.10 -2.91 -0.02 3.60 16 6 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 7 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 8 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.06 2.28 4.40 86.31 0.38 2.65 16 13 C -0.07 -2.08 2.31 -10.71 -0.02 -2.11 16 14 C -0.10 -3.03 5.24 30.65 0.16 -2.87 16 15 C 0.06 1.50 6.55 86.33 0.57 2.06 16 16 N -0.70 -14.52 6.85 -514.01 -3.52 -18.04 16 17 C 0.06 1.24 6.55 86.33 0.57 1.81 16 18 C -0.11 -2.67 5.38 30.65 0.16 -2.50 16 19 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 20 H 0.06 2.41 6.85 -2.39 -0.02 2.40 16 21 H 0.08 2.52 6.69 -2.39 -0.02 2.50 16 22 H -0.04 -2.50 8.12 -2.39 -0.02 -2.52 16 23 H 0.00 -0.01 7.83 -2.39 -0.02 -0.03 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.02 0.89 8.00 -2.39 -0.02 0.88 16 26 H 0.05 2.00 7.73 -2.39 -0.02 1.98 16 27 H 0.07 1.92 6.73 -2.39 -0.02 1.91 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.35 5.52 8.90 -89.69 -0.80 4.72 16 33 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.81 282.71 -0.80 -65.62 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.23 Total: 6.96 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 4.07 Total: -15.96 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -7.13 Total: -103.54 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.81 -0.80 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.517 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds