Wall clock time and date at job start Sun Mar 29 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.87085 * 2 1 4 4 N 1.46497 * 109.47078 * 59.29811 * 3 2 1 5 5 C 1.34776 * 119.99869 * 179.97438 * 4 3 2 6 6 O 1.21680 * 120.00012 * 359.97438 * 5 4 3 7 7 C 1.46376 * 119.99835 * 179.72770 * 5 4 3 8 8 H 1.07999 * 119.99834 * 354.21092 * 7 5 4 9 9 C 1.40040 * 120.00110 * 174.21835 * 7 5 4 10 10 N 1.30671 * 120.00168 * 6.14280 * 9 7 5 11 11 Si 1.86798 * 120.00257 * 186.15016 * 9 7 5 12 12 H 1.48500 * 109.47280 * 94.97989 * 11 9 7 13 13 H 1.48498 * 109.47242 * 214.98082 * 11 9 7 14 14 H 1.48506 * 109.46945 * 334.97736 * 11 9 7 15 15 C 1.54099 * 109.87933 * 238.99451 * 2 1 3 16 16 C 1.54816 * 104.18582 * 242.45473 * 15 2 1 17 17 C 1.54991 * 102.09481 * 20.88128 * 16 15 2 18 18 O 1.43744 * 109.87880 * 121.00662 * 2 1 3 19 19 H 1.09003 * 109.46783 * 60.69850 * 1 2 3 20 20 H 1.09000 * 109.46902 * 180.70224 * 1 2 3 21 21 H 1.09000 * 109.46911 * 300.70270 * 1 2 3 22 22 H 1.09005 * 109.47075 * 299.29756 * 3 2 1 23 23 H 1.09001 * 109.47005 * 179.29590 * 3 2 1 24 24 H 0.96998 * 119.99865 * 0.02562 * 4 3 2 25 25 H 0.97003 * 120.00448 * 179.97438 * 10 9 7 26 26 H 1.08999 * 110.49320 * 1.12890 * 15 2 1 27 27 H 1.09003 * 110.48987 * 123.65089 * 15 2 1 28 28 H 1.09006 * 110.90503 * 139.08181 * 16 15 2 29 29 H 1.09000 * 110.90906 * 262.64031 * 16 15 2 30 30 H 1.09000 * 110.61790 * 81.47092 * 17 16 15 31 31 H 1.08992 * 110.62207 * 204.31713 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 7 1.5528 2.1379 1.1876 5 6 1.8854 3.4266 1.3996 6 8 2.5990 4.0095 0.6048 7 6 1.3837 4.1268 2.5831 8 1 0.6733 3.6421 3.2365 9 6 1.8247 5.4250 2.8681 10 7 2.5891 6.0569 2.0173 11 14 1.3204 6.2534 4.4646 12 1 2.3806 6.0500 5.4843 13 1 1.1320 7.7076 4.2297 14 1 0.0475 5.6613 4.9489 15 6 2.0540 -0.7465 -1.2421 16 6 2.8358 -1.9494 -0.6601 17 6 2.2334 -2.0703 0.7629 18 8 2.0188 -0.6964 1.1586 19 1 -0.3633 0.5030 -0.8962 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3633 0.5247 0.8836 22 1 1.7006 1.9516 -0.8963 23 1 3.1400 1.4314 0.0126 24 1 0.9849 1.6729 1.8217 25 1 2.8943 6.9563 2.2145 26 1 1.2238 -1.0929 -1.8576 27 1 2.7158 -0.1037 -1.8226 28 1 2.6477 -2.8529 -1.2402 29 1 3.9033 -1.7341 -0.6143 30 1 1.2878 -2.6116 0.7347 31 1 2.9356 -2.5614 1.4365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087254185.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:46 Heat of formation + Delta-G solvation = -95.340420 kcal Electronic energy + Delta-G solvation = -14472.690144 eV Core-core repulsion = 11946.691191 eV Total energy + Delta-G solvation = -2525.998953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.71228 -36.99211 -33.68869 -32.35910 -32.00965 -30.48858 -27.04972 -26.22299 -24.35009 -21.71282 -19.96881 -19.41671 -17.28093 -16.10893 -15.61585 -15.14168 -14.92209 -14.00326 -13.90990 -13.74475 -13.18864 -12.70340 -12.31424 -12.15203 -11.65717 -11.63774 -11.34882 -11.13471 -11.04674 -10.79627 -10.60803 -10.56038 -10.34145 -10.11978 -9.43171 -8.77768 -7.52757 -7.36573 -6.11959 -4.54997 3.19116 3.25813 3.29700 3.95970 4.17990 4.61919 4.66821 4.79122 4.90031 5.02923 5.22699 5.34330 5.41258 5.60092 5.68865 5.75452 5.83893 5.88279 5.97921 6.03835 6.17891 6.36912 6.43981 6.60757 7.16708 7.51293 8.04965 8.21415 8.43212 9.10461 9.65507 10.68263 10.87570 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057792 B = 0.006908 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.382541 B = 4052.034983 C = 4213.721738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 C 0.145 3.855 4 N -0.760 5.760 5 C 0.555 3.445 6 O -0.585 6.585 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.770 5.770 11 Si 0.907 3.093 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.144 4.144 16 C -0.154 4.154 17 C 0.044 3.956 18 O -0.358 6.358 19 H 0.065 0.935 20 H 0.052 0.948 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.383 0.617 25 H 0.267 0.733 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -14.245 -3.367 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 C 0.019 3.981 4 N -0.416 5.416 5 C 0.359 3.641 6 O -0.468 6.468 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.399 5.399 11 Si 0.732 3.268 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.182 4.182 16 C -0.192 4.192 17 C -0.033 4.033 18 O -0.277 6.277 19 H 0.084 0.916 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.215 0.785 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.261 -13.538 -3.812 14.245 hybrid contribution -0.524 0.005 0.861 1.008 sum -2.785 -13.533 -2.950 14.128 Atomic orbital electron populations 1.22207 0.94771 1.01475 1.03250 1.22442 0.93891 0.93445 0.85161 1.21009 0.98428 0.87640 0.90983 1.46039 1.56839 1.13698 1.25056 1.18210 0.80415 0.78830 0.86644 1.90582 1.41485 1.66393 1.48370 1.20891 1.28215 0.99725 1.09431 0.91452 1.25699 0.93528 0.96894 0.97032 1.70035 1.25979 1.10894 1.32994 0.86375 0.79573 0.78495 0.82380 1.19836 1.20517 1.18907 1.22971 1.00435 0.97054 0.97770 1.23108 1.00916 0.98379 0.96773 1.23524 0.99342 0.85239 0.95180 1.89052 1.85956 1.19891 1.32829 0.91562 0.92882 0.91258 0.92389 0.92966 0.78472 0.92229 0.90578 0.90056 0.90596 0.90502 0.92629 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.44 37.16 0.31 -1.91 16 2 C 0.09 1.41 0.82 -90.04 -0.07 1.33 16 3 C 0.14 2.96 4.62 -4.04 -0.02 2.95 16 4 N -0.76 -18.21 5.17 -61.72 -0.32 -18.53 16 5 C 0.56 16.55 7.74 -12.99 -0.10 16.45 16 6 O -0.58 -19.66 15.04 5.21 0.08 -19.58 16 7 C -0.55 -16.06 9.53 -35.63 -0.34 -16.40 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 9 C 0.09 2.53 5.49 -17.37 -0.10 2.44 16 10 N -0.77 -23.79 11.85 55.55 0.66 -23.13 16 11 Si 0.91 20.76 29.56 -169.99 -5.03 15.73 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 15 C -0.14 -1.76 6.27 -25.20 -0.16 -1.92 16 16 C -0.15 -1.64 7.16 -24.72 -0.18 -1.82 16 17 C 0.04 0.52 7.67 38.21 0.29 0.82 16 18 O -0.36 -5.93 10.71 -35.23 -0.38 -6.30 16 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.07 1.06 6.83 -51.93 -0.35 0.70 16 22 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.38 8.41 7.20 -40.82 -0.29 8.11 16 25 H 0.27 7.45 8.29 -40.82 -0.34 7.12 16 26 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 27 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 262.12 15.07 3.95 3.95 Total: -1.00 -35.36 262.12 -5.77 -41.13 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.38 Total: 4.79 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.36 Total: 1.94 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.34 Total: -41.66 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.30 Total: -25.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -35.36 -5.77 -41.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087254185.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.212 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds