Wall clock time and date at job start Sun Mar 29 2020 22:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.87085 * 2 1 4 4 N 1.46497 * 109.47078 * 59.29811 * 3 2 1 5 5 C 1.34776 * 119.99869 * 179.97438 * 4 3 2 6 6 O 1.21680 * 120.00012 * 359.97438 * 5 4 3 7 7 C 1.46376 * 119.99835 * 179.72770 * 5 4 3 8 8 H 1.07999 * 119.99834 * 354.21092 * 7 5 4 9 9 C 1.40040 * 120.00110 * 174.21835 * 7 5 4 10 10 N 1.30671 * 120.00168 * 6.14280 * 9 7 5 11 11 Si 1.86798 * 120.00257 * 186.15016 * 9 7 5 12 12 H 1.48500 * 109.47280 * 94.97989 * 11 9 7 13 13 H 1.48498 * 109.47242 * 214.98082 * 11 9 7 14 14 H 1.48506 * 109.46945 * 334.97736 * 11 9 7 15 15 C 1.54099 * 109.87933 * 238.99451 * 2 1 3 16 16 C 1.54816 * 104.18582 * 242.45473 * 15 2 1 17 17 C 1.54991 * 102.09481 * 20.88128 * 16 15 2 18 18 O 1.43744 * 109.87880 * 121.00662 * 2 1 3 19 19 H 1.09003 * 109.46783 * 60.69850 * 1 2 3 20 20 H 1.09000 * 109.46902 * 180.70224 * 1 2 3 21 21 H 1.09000 * 109.46911 * 300.70270 * 1 2 3 22 22 H 1.09005 * 109.47075 * 299.29756 * 3 2 1 23 23 H 1.09001 * 109.47005 * 179.29590 * 3 2 1 24 24 H 0.96998 * 119.99865 * 0.02562 * 4 3 2 25 25 H 0.97003 * 120.00448 * 179.97438 * 10 9 7 26 26 H 1.08999 * 110.49320 * 1.12890 * 15 2 1 27 27 H 1.09003 * 110.48987 * 123.65089 * 15 2 1 28 28 H 1.09006 * 110.90503 * 139.08181 * 16 15 2 29 29 H 1.09000 * 110.90906 * 262.64031 * 16 15 2 30 30 H 1.09000 * 110.61790 * 81.47092 * 17 16 15 31 31 H 1.08992 * 110.62207 * 204.31713 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 7 1.5528 2.1379 1.1876 5 6 1.8854 3.4266 1.3996 6 8 2.5990 4.0095 0.6048 7 6 1.3837 4.1268 2.5831 8 1 0.6733 3.6421 3.2365 9 6 1.8247 5.4250 2.8681 10 7 2.5891 6.0569 2.0173 11 14 1.3204 6.2534 4.4646 12 1 2.3806 6.0500 5.4843 13 1 1.1320 7.7076 4.2297 14 1 0.0475 5.6613 4.9489 15 6 2.0540 -0.7465 -1.2421 16 6 2.8358 -1.9494 -0.6601 17 6 2.2334 -2.0703 0.7629 18 8 2.0188 -0.6964 1.1586 19 1 -0.3633 0.5030 -0.8962 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3633 0.5247 0.8836 22 1 1.7006 1.9516 -0.8963 23 1 3.1400 1.4314 0.0126 24 1 0.9849 1.6729 1.8217 25 1 2.8943 6.9563 2.2145 26 1 1.2238 -1.0929 -1.8576 27 1 2.7158 -0.1037 -1.8226 28 1 2.6477 -2.8529 -1.2402 29 1 3.9033 -1.7341 -0.6143 30 1 1.2878 -2.6116 0.7347 31 1 2.9356 -2.5614 1.4365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087254185.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:45 Heat of formation + Delta-G solvation = -122.524760 kcal Electronic energy + Delta-G solvation = -14473.868946 eV Core-core repulsion = 11946.691191 eV Total energy + Delta-G solvation = -2527.177755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91765 -39.13015 -35.49024 -34.52211 -33.20831 -31.94066 -28.90115 -27.63801 -25.94661 -22.74032 -21.64889 -21.07457 -19.29123 -17.53072 -17.27226 -16.70060 -16.24708 -15.89112 -15.62060 -14.95283 -14.73086 -14.36645 -13.83808 -13.41905 -13.34242 -13.11222 -12.76726 -12.67108 -12.60267 -12.53714 -12.03293 -11.98925 -11.74461 -11.54354 -10.93931 -10.58668 -9.88537 -9.47218 -8.30779 -6.86048 1.39399 1.41353 1.57354 2.24961 2.46187 2.83522 3.22001 3.57608 3.61582 3.83909 3.87342 4.14222 4.18209 4.42426 4.61627 4.68890 4.71293 4.85960 4.89455 4.95367 4.97998 5.10533 5.23126 5.31260 5.32213 5.86937 6.03876 6.22751 6.29256 6.85728 7.53931 8.47906 8.66492 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057792 B = 0.006908 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.382541 B = 4052.034983 C = 4213.721738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 C 0.142 3.858 4 N -0.748 5.748 5 C 0.536 3.464 6 O -0.636 6.636 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.028 3.972 10 N -0.823 5.823 11 Si 1.001 2.999 12 H -0.263 1.263 13 H -0.270 1.270 14 H -0.248 1.248 15 C -0.143 4.143 16 C -0.147 4.147 17 C 0.036 3.964 18 O -0.393 6.393 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.394 0.606 25 H 0.275 0.725 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -15.779 -2.481 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 C 0.017 3.983 4 N -0.402 5.402 5 C 0.340 3.660 6 O -0.524 6.524 7 C -0.612 4.612 8 H 0.103 0.897 9 C -0.187 4.187 10 N -0.453 5.453 11 Si 0.820 3.180 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.171 1.171 15 C -0.181 4.181 16 C -0.184 4.184 17 C -0.040 4.040 18 O -0.313 6.313 19 H 0.091 0.909 20 H 0.101 0.899 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.228 0.772 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.576 -15.142 -2.930 15.832 hybrid contribution -0.093 0.413 0.543 0.689 sum -3.669 -14.729 -2.387 15.365 Atomic orbital electron populations 1.22179 0.93259 1.03203 1.02672 1.22363 0.94864 0.90371 0.86819 1.21161 0.96936 0.91056 0.89105 1.45747 1.56015 1.12320 1.26130 1.18650 0.80189 0.80494 0.86652 1.90530 1.43764 1.68089 1.49975 1.21427 1.29085 1.00888 1.09812 0.89669 1.27015 0.92817 0.97293 1.01586 1.70195 1.27327 1.11767 1.35964 0.84969 0.79806 0.77234 0.76008 1.18806 1.19423 1.17115 1.22996 1.01467 0.97203 0.96388 1.23112 1.00108 0.98922 0.96306 1.23823 1.00924 0.83131 0.96082 1.89003 1.86270 1.22448 1.33618 0.90921 0.89890 0.93119 0.93207 0.95607 0.77238 0.91494 0.87786 0.90919 0.87229 0.91290 0.90440 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 8.44 71.98 0.61 -3.46 16 2 C 0.10 2.90 0.82 -10.42 -0.01 2.89 16 3 C 0.14 6.03 4.62 86.38 0.40 6.43 16 4 N -0.75 -36.90 5.17 -467.41 -2.42 -39.32 16 5 C 0.54 33.13 7.74 86.36 0.67 33.79 16 6 O -0.64 -44.80 15.04 -4.28 -0.06 -44.87 16 7 C -0.58 -34.38 9.53 24.83 0.24 -34.15 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.03 1.61 5.49 85.30 0.47 2.08 16 10 N -0.82 -52.13 11.85 21.83 0.26 -51.87 16 11 Si 1.00 42.39 29.56 68.60 2.03 44.41 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 14 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 15 C -0.14 -3.20 6.27 31.59 0.20 -3.00 16 16 C -0.15 -2.72 7.16 31.90 0.23 -2.49 16 17 C 0.04 0.77 7.67 72.66 0.56 1.33 16 18 O -0.39 -12.63 10.71 -148.98 -1.60 -14.22 16 19 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.05 1.50 6.83 -2.39 -0.02 1.48 16 22 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.39 17.57 7.20 -92.71 -0.67 16.90 16 25 H 0.28 15.67 8.29 -92.71 -0.77 14.90 16 26 H 0.10 1.77 7.70 -2.39 -0.02 1.75 16 27 H 0.07 1.75 7.70 -2.39 -0.02 1.73 16 28 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -79.73 262.12 2.02 -77.71 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.45 Total: 24.74 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 3.36 Total: 3.41 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.16 Total: -91.19 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -1.66 Total: -59.09 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -79.73 2.02 -77.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087254185.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.811 kcal (2) G-P(sol) polarization free energy of solvation -79.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds