Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48491 * 109.47436 * 270.00002 * 3 2 1 5 5 H 1.48500 * 109.47358 * 30.00321 * 3 2 1 6 6 H 1.48508 * 109.46726 * 150.00153 * 3 2 1 7 7 C 1.38952 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00145 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99511 * 0.02562 * 10 9 7 12 12 C 1.50690 * 120.00351 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47514 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.48089 * 304.98007 * 13 12 10 15 15 C 1.53090 * 109.48304 * 184.93947 * 13 12 10 16 16 C 1.53176 * 109.16668 * 182.40914 * 15 13 12 17 17 C 1.53181 * 109.03564 * 56.97896 * 16 15 13 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 16 15 19 19 O 1.42902 * 109.47734 * 65.00001 * 13 12 10 20 20 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00144 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.47550 * 59.99417 * 12 10 9 23 23 H 1.09004 * 109.46856 * 299.99907 * 12 10 9 24 24 H 1.09005 * 109.52564 * 302.31806 * 15 13 12 25 25 H 1.09001 * 109.51975 * 62.50094 * 15 13 12 26 26 H 1.09005 * 109.54225 * 297.11519 * 16 15 13 27 27 H 1.08991 * 109.54673 * 176.84737 * 16 15 13 28 28 H 1.08998 * 109.52547 * 183.11606 * 17 16 15 29 29 H 1.09004 * 109.52249 * 62.92485 * 17 16 15 30 30 H 1.08996 * 109.47593 * 177.59033 * 18 17 16 31 31 H 1.09001 * 109.48107 * 297.61277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 6 2.2378 -6.0259 -0.0016 14 1 2.9218 -5.9190 -0.8435 15 6 1.4766 -7.3483 -0.1265 16 6 2.4733 -8.5099 -0.0657 17 6 3.2686 -8.4180 1.2402 18 6 3.9606 -7.0543 1.3123 19 8 2.9802 -6.0187 1.2194 20 1 -0.4850 0.8401 0.0004 21 1 0.3533 -2.3907 -0.0005 22 1 0.6172 -4.9205 -0.8913 23 1 0.6167 -4.9208 0.8887 24 1 0.7635 -7.4369 0.6931 25 1 0.9448 -7.3740 -1.0776 26 1 3.1559 -8.4494 -0.9134 27 1 1.9330 -9.4559 -0.0978 28 1 4.0183 -9.2087 1.2665 29 1 2.5917 -8.5282 2.0875 30 1 4.4933 -6.9667 2.2591 31 1 4.6672 -6.9612 0.4876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087263056.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = -104.416797 kcal Electronic energy + Delta-G solvation = -14343.623574 eV Core-core repulsion = 11817.231039 eV Total energy + Delta-G solvation = -2526.392534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27041 -37.69689 -33.89151 -33.35101 -32.29331 -31.07256 -28.01980 -24.93623 -23.93814 -22.15993 -20.04140 -19.01533 -17.75465 -16.07589 -15.88292 -15.50576 -14.59665 -14.42340 -14.18934 -13.79930 -13.55872 -13.21289 -12.48356 -12.06939 -12.01386 -11.49348 -11.39597 -11.02258 -11.00964 -10.86322 -10.55385 -10.33466 -10.15082 -9.99440 -9.42075 -9.03618 -8.24660 -7.86825 -6.33423 -3.73583 3.23199 3.30918 3.37574 4.00285 4.21610 4.24529 4.76191 4.89111 4.96425 5.05381 5.34211 5.37053 5.44230 5.54915 5.66058 5.81113 5.85881 5.92904 5.98994 6.04132 6.08005 6.22953 6.28614 6.51842 6.56514 7.62970 7.71103 8.15213 8.71408 9.27057 9.65079 10.17736 10.84755 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071959 B = 0.006365 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.015166 B = 4398.007403 C = 4651.676769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.569 5.569 10 C 0.447 3.553 11 O -0.585 6.585 12 C -0.128 4.128 13 C 0.113 3.887 14 H 0.062 0.938 15 C -0.153 4.153 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.062 3.938 19 O -0.360 6.360 20 H 0.270 0.730 21 H 0.392 0.608 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -13.859 0.094 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.233 3.767 11 O -0.469 6.469 12 C -0.168 4.168 13 C 0.055 3.945 14 H 0.080 0.920 15 C -0.191 4.191 16 C -0.158 4.158 17 C -0.194 4.194 18 C -0.015 4.015 19 O -0.278 6.278 20 H 0.080 0.920 21 H 0.225 0.775 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.615 -13.547 0.246 13.645 hybrid contribution -0.237 0.618 -0.193 0.689 sum 1.379 -12.929 0.053 13.003 Atomic orbital electron populations 1.69618 1.05904 1.27966 1.51154 1.25240 0.95620 0.99623 0.97596 0.85872 0.79243 0.80959 0.78290 1.20501 1.20986 1.19476 1.19710 0.93341 0.82408 1.47204 0.88047 1.41895 1.09127 1.04653 1.64843 1.19817 0.88321 0.84816 0.83790 1.90519 1.13888 1.87246 1.55238 1.21576 0.98205 0.93649 1.03370 1.21705 0.92447 0.92338 0.88050 0.91996 1.22274 0.98713 0.95455 1.02612 1.21567 0.98223 0.98314 0.97732 1.22225 1.00199 0.98550 0.98464 1.22458 0.90862 0.86426 1.01773 1.88048 1.51008 1.50923 1.37826 0.92006 0.77506 0.89193 0.89712 0.91160 0.91013 0.91929 0.91888 0.91429 0.91310 0.89452 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.30 13.05 55.50 0.72 -24.58 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.59 9.68 -14.93 -0.14 -8.73 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.57 -15.05 5.29 -10.97 -0.06 -15.11 16 10 C 0.45 11.08 7.66 -10.99 -0.08 11.00 16 11 O -0.58 -16.59 15.00 -8.87 -0.13 -16.72 16 12 C -0.13 -2.36 5.41 -27.89 -0.15 -2.51 16 13 C 0.11 1.94 2.19 -26.68 -0.06 1.88 16 14 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 15 C -0.15 -1.95 5.42 -26.59 -0.14 -2.10 16 16 C -0.12 -1.35 6.03 -26.55 -0.16 -1.51 16 17 C -0.16 -1.79 6.14 -26.59 -0.16 -1.95 16 18 C 0.06 0.90 6.84 37.21 0.25 1.16 16 19 O -0.36 -6.83 9.64 -49.65 -0.48 -7.31 16 20 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 21 H 0.39 9.88 7.90 -40.82 -0.32 9.55 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 261.45 15.07 3.94 3.94 Total: -1.00 -32.52 261.45 -6.25 -38.77 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.47 Total: 6.71 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.75 Total: -2.30 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.67 Total: -39.68 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.61 Total: -24.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.52 -6.25 -38.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087263056.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.648 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds