Wall clock time and date at job start Sun Mar 29 2020 22:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48491 * 109.47436 * 270.00002 * 3 2 1 5 5 H 1.48500 * 109.47358 * 30.00321 * 3 2 1 6 6 H 1.48508 * 109.46726 * 150.00153 * 3 2 1 7 7 C 1.38952 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00145 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99511 * 0.02562 * 10 9 7 12 12 C 1.50690 * 120.00351 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47514 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.48089 * 304.98007 * 13 12 10 15 15 C 1.53090 * 109.48304 * 184.93947 * 13 12 10 16 16 C 1.53176 * 109.16668 * 182.40914 * 15 13 12 17 17 C 1.53181 * 109.03564 * 56.97896 * 16 15 13 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 16 15 19 19 O 1.42902 * 109.47734 * 65.00001 * 13 12 10 20 20 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00144 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.47550 * 59.99417 * 12 10 9 23 23 H 1.09004 * 109.46856 * 299.99907 * 12 10 9 24 24 H 1.09005 * 109.52564 * 302.31806 * 15 13 12 25 25 H 1.09001 * 109.51975 * 62.50094 * 15 13 12 26 26 H 1.09005 * 109.54225 * 297.11519 * 16 15 13 27 27 H 1.08991 * 109.54673 * 176.84737 * 16 15 13 28 28 H 1.08998 * 109.52547 * 183.11606 * 17 16 15 29 29 H 1.09004 * 109.52249 * 62.92485 * 17 16 15 30 30 H 1.08996 * 109.47593 * 177.59033 * 18 17 16 31 31 H 1.09001 * 109.48107 * 297.61277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 6 2.2378 -6.0259 -0.0016 14 1 2.9218 -5.9190 -0.8435 15 6 1.4766 -7.3483 -0.1265 16 6 2.4733 -8.5099 -0.0657 17 6 3.2686 -8.4180 1.2402 18 6 3.9606 -7.0543 1.3123 19 8 2.9802 -6.0187 1.2194 20 1 -0.4850 0.8401 0.0004 21 1 0.3533 -2.3907 -0.0005 22 1 0.6172 -4.9205 -0.8913 23 1 0.6167 -4.9208 0.8887 24 1 0.7635 -7.4369 0.6931 25 1 0.9448 -7.3740 -1.0776 26 1 3.1559 -8.4494 -0.9134 27 1 1.9330 -9.4559 -0.0978 28 1 4.0183 -9.2087 1.2665 29 1 2.5917 -8.5282 2.0875 30 1 4.4933 -6.9667 2.2591 31 1 4.6672 -6.9612 0.4876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087263056.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:09 Heat of formation + Delta-G solvation = -126.827169 kcal Electronic energy + Delta-G solvation = -14344.595360 eV Core-core repulsion = 11817.231039 eV Total energy + Delta-G solvation = -2527.364321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68518 -39.48484 -35.97322 -34.44969 -33.71557 -33.12182 -29.40956 -26.82548 -25.15282 -23.48890 -21.09868 -20.93103 -19.85810 -17.65390 -17.39371 -16.77803 -16.55314 -15.86861 -15.46344 -15.38349 -15.21464 -14.65483 -13.76094 -13.59851 -13.44242 -13.18948 -12.98232 -12.71836 -12.41432 -12.13047 -12.09963 -11.90201 -11.58285 -11.49527 -11.18488 -10.35666 -10.18143 -9.99390 -8.45724 -5.94472 1.38139 1.40795 1.54279 2.09277 2.30851 2.95479 3.20568 3.23292 3.86746 3.98688 3.99902 4.11032 4.27738 4.30118 4.53666 4.58027 4.68811 4.79843 4.85637 4.95630 5.02914 5.13543 5.17276 5.23099 5.41433 5.44550 6.00762 6.48089 6.61584 7.13863 7.58242 8.15118 8.72054 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071959 B = 0.006365 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.015166 B = 4398.007403 C = 4651.676769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.577 5.577 10 C 0.440 3.560 11 O -0.627 6.627 12 C -0.119 4.119 13 C 0.110 3.890 14 H 0.039 0.961 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.148 4.148 18 C 0.051 3.949 19 O -0.399 6.399 20 H 0.278 0.722 21 H 0.396 0.604 22 H 0.122 0.878 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -14.885 -0.044 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.215 5.215 10 C 0.228 3.772 11 O -0.514 6.514 12 C -0.158 4.158 13 C 0.052 3.948 14 H 0.057 0.943 15 C -0.181 4.181 16 C -0.158 4.158 17 C -0.186 4.186 18 C -0.025 4.025 19 O -0.319 6.319 20 H 0.087 0.913 21 H 0.230 0.770 22 H 0.140 0.860 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.746 -14.593 0.103 14.612 hybrid contribution 0.052 0.927 -0.137 0.938 sum 0.797 -13.666 -0.033 13.689 Atomic orbital electron populations 1.69677 1.06817 1.29261 1.50531 1.26048 0.96582 1.02394 0.96313 0.84919 0.77798 0.76823 0.78716 1.19443 1.19372 1.19991 1.19674 0.92628 0.84278 1.49959 0.90635 1.41984 1.09270 1.04768 1.65433 1.20964 0.88250 0.86360 0.81652 1.90484 1.16105 1.88159 1.56627 1.21630 0.98366 0.90297 1.05554 1.21773 0.92116 0.94160 0.86798 0.94273 1.22209 0.98734 0.93223 1.03975 1.21615 0.98041 0.98750 0.97421 1.22168 1.00681 0.96854 0.98898 1.22696 0.90487 0.87532 1.01796 1.87977 1.52189 1.53137 1.38573 0.91295 0.76974 0.85972 0.88197 0.90426 0.89023 0.91948 0.89126 0.88982 0.90998 0.88907 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.14 13.05 21.66 0.28 -50.85 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 44.21 29.55 68.60 2.03 46.24 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.34 -19.93 9.68 84.04 0.81 -19.11 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.58 -31.20 5.29 -306.99 -1.62 -32.82 16 10 C 0.44 22.28 7.66 87.65 0.67 22.95 16 11 O -0.63 -36.96 15.00 10.71 0.16 -36.80 16 12 C -0.12 -4.29 5.41 29.85 0.16 -4.13 16 13 C 0.11 3.69 2.19 30.62 0.07 3.76 16 14 H 0.04 1.47 7.96 -2.39 -0.02 1.45 16 15 C -0.14 -3.29 5.42 30.68 0.17 -3.12 16 16 C -0.12 -2.33 6.03 30.71 0.19 -2.14 16 17 C -0.15 -3.03 6.14 30.69 0.19 -2.85 16 18 C 0.05 1.48 6.84 72.01 0.49 1.97 16 19 O -0.40 -15.25 9.64 -135.19 -1.30 -16.55 16 20 H 0.28 14.35 8.31 -92.70 -0.77 13.58 16 21 H 0.40 20.20 7.90 -92.71 -0.73 19.47 16 22 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 23 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 24 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.52 261.45 3.14 -68.38 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.38 Total: 25.39 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 3.21 Total: -2.98 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -1.34 Total: -83.68 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.14 Total: -53.35 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.52 3.14 -68.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087263056.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.449 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds