Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46967 * 90.00540 * 3 2 1 5 5 H 1.48505 * 109.47170 * 210.00012 * 3 2 1 6 6 H 1.48498 * 109.47513 * 330.00626 * 3 2 1 7 7 C 1.38954 * 119.99693 * 179.73210 * 2 1 3 8 8 H 1.08001 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99538 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.46716 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.48117 * 55.02517 * 13 12 10 15 15 C 1.53095 * 109.47844 * 175.05384 * 13 12 10 16 16 C 1.53183 * 109.16399 * 177.59043 * 15 13 12 17 17 C 1.53176 * 109.03371 * 303.02206 * 16 15 13 18 18 C 1.53086 * 109.16241 * 56.98131 * 17 16 15 19 19 O 1.42900 * 109.41623 * 302.38418 * 18 17 16 20 20 H 0.97005 * 120.00032 * 179.97438 * 1 2 3 21 21 H 0.96991 * 119.99873 * 359.97438 * 9 7 2 22 22 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 23 23 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 24 24 H 1.09000 * 109.52575 * 297.49500 * 15 13 12 25 25 H 1.09002 * 109.52486 * 57.68668 * 15 13 12 26 26 H 1.08994 * 109.54289 * 183.15180 * 16 15 13 27 27 H 1.08999 * 109.53966 * 62.89092 * 16 15 13 28 28 H 1.08997 * 109.52335 * 297.07173 * 17 16 15 29 29 H 1.08998 * 109.56740 * 176.91458 * 17 16 15 30 30 H 1.09008 * 109.48151 * 182.40650 * 18 17 16 31 31 H 1.08998 * 109.49429 * 62.37751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.6999 7 6 2.0088 -1.2034 0.0056 8 1 3.0889 -1.2034 0.0060 9 7 1.3233 -2.3907 0.0117 10 6 1.9972 -3.5579 0.0177 11 8 3.2101 -3.5579 0.0172 12 6 1.2436 -4.8629 0.0238 13 6 2.2379 -6.0258 0.0292 14 1 2.9219 -5.9154 0.8708 15 6 1.4767 -7.3477 0.1599 16 6 2.4734 -8.5096 0.1040 17 6 3.2686 -8.4232 -1.2023 18 6 3.9606 -7.0599 -1.2802 19 8 2.9803 -6.0239 -1.1918 20 1 -0.4850 -0.8401 -0.0004 21 1 0.3534 -2.3906 0.0125 22 1 0.6167 -4.9163 0.9139 23 1 0.6173 -4.9251 -0.8660 24 1 0.9450 -7.3694 1.1111 25 1 0.7636 -7.4399 -0.6593 26 1 1.9331 -9.4555 0.1402 27 1 3.1560 -8.4454 0.9514 28 1 2.5917 -8.5371 -2.0490 29 1 4.0183 -9.2141 -1.2263 30 1 4.4933 -6.9762 -2.2276 31 1 4.6672 -6.9630 -0.4560 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087263057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = -103.660753 kcal Electronic energy + Delta-G solvation = -14377.694214 eV Core-core repulsion = 11851.334464 eV Total energy + Delta-G solvation = -2526.359750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.35032 -37.85049 -34.25928 -33.41333 -32.37673 -30.92121 -28.03307 -24.73976 -23.92018 -22.25383 -20.10693 -19.42029 -17.79923 -16.17194 -16.09971 -15.75191 -14.69874 -14.38944 -14.23675 -13.69642 -13.67884 -13.45461 -12.56617 -12.27213 -12.03581 -11.52911 -11.12731 -11.08143 -11.00290 -10.84404 -10.60791 -10.17367 -10.08141 -9.78227 -9.45902 -9.09975 -8.30975 -7.93898 -6.67347 -3.79585 3.36235 3.39826 3.59296 3.93306 4.15514 4.31377 4.67476 4.83987 4.91020 4.97841 5.25548 5.32632 5.37773 5.47389 5.60402 5.72347 5.79243 5.86816 5.91678 5.95839 6.01070 6.15188 6.19585 6.34266 6.44774 7.64052 7.89691 8.16954 8.69864 8.90212 9.57840 9.99641 10.76571 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071679 B = 0.006397 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.537117 B = 4375.925593 C = 4631.060482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.012 4.012 3 Si 1.094 2.906 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.581 5.581 10 C 0.449 3.551 11 O -0.578 6.578 12 C -0.128 4.128 13 C 0.113 3.887 14 H 0.062 0.938 15 C -0.153 4.153 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.062 3.938 19 O -0.360 6.360 20 H 0.261 0.739 21 H 0.375 0.625 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -14.303 -0.040 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.214 4.214 3 Si 0.920 3.080 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.510 4.510 8 H 0.116 0.884 9 N -0.219 5.219 10 C 0.235 3.765 11 O -0.461 6.461 12 C -0.168 4.168 13 C 0.055 3.945 14 H 0.080 0.920 15 C -0.190 4.190 16 C -0.158 4.158 17 C -0.194 4.194 18 C -0.015 4.015 19 O -0.279 6.279 20 H 0.072 0.928 21 H 0.208 0.792 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.086 -12.480 -0.194 12.655 hybrid contribution -0.430 -2.000 0.205 2.056 sum 1.656 -14.480 0.011 14.575 Atomic orbital electron populations 1.70865 1.06501 1.29350 1.47776 1.26479 0.96581 1.02572 0.95732 0.83089 0.74366 0.73478 0.77041 1.21204 1.20997 1.20703 1.20573 0.94646 0.84018 1.51736 0.88425 1.41972 1.08109 1.05619 1.66170 1.19739 0.88354 0.84545 0.83823 1.90525 1.13799 1.87091 1.54730 1.21587 0.98275 0.93698 1.03289 1.21692 0.92425 0.92284 0.88117 0.91968 1.22273 0.98728 0.95436 1.02600 1.21566 0.98209 0.98296 0.97757 1.22220 1.00224 0.98541 0.98447 1.22466 0.90823 0.86388 1.01845 1.88043 1.51055 1.51102 1.37667 0.92784 0.79198 0.89239 0.89755 0.91012 0.91161 0.91821 0.91897 0.91301 0.91349 0.89389 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.07 13.68 55.50 0.76 -25.31 16 2 C -0.01 -0.33 5.50 -17.47 -0.10 -0.43 16 3 Si 1.09 25.03 29.92 -169.99 -5.09 19.95 16 4 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.38 -11.10 9.68 -14.93 -0.14 -11.25 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.58 -15.28 5.28 -10.96 -0.06 -15.34 16 10 C 0.45 11.17 7.66 -10.99 -0.08 11.09 16 11 O -0.58 -16.53 15.00 -8.87 -0.13 -16.67 16 12 C -0.13 -2.35 5.41 -27.88 -0.15 -2.50 16 13 C 0.11 1.93 2.19 -26.68 -0.06 1.88 16 14 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 15 C -0.15 -1.94 5.42 -26.59 -0.14 -2.08 16 16 C -0.12 -1.34 6.03 -26.55 -0.16 -1.50 16 17 C -0.16 -1.77 6.14 -26.60 -0.16 -1.94 16 18 C 0.06 0.90 6.84 37.20 0.25 1.15 16 19 O -0.36 -6.83 9.64 -49.65 -0.48 -7.31 16 20 H 0.26 7.23 6.78 -40.82 -0.28 6.96 16 21 H 0.38 9.09 6.73 -40.82 -0.27 8.82 16 22 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 23 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -33.91 259.75 -6.19 -40.10 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.36 Total: 6.24 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.75 Total: -5.57 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.70 Total: -40.65 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.61 Total: -23.98 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.09 Total: 19.95 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.91 -6.19 -40.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087263057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.556 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds