Wall clock time and date at job start Sun Mar 29 2020 22:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46967 * 90.00540 * 3 2 1 5 5 H 1.48505 * 109.47170 * 210.00012 * 3 2 1 6 6 H 1.48498 * 109.47513 * 330.00626 * 3 2 1 7 7 C 1.38954 * 119.99693 * 179.73210 * 2 1 3 8 8 H 1.08001 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99538 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.46716 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.48117 * 55.02517 * 13 12 10 15 15 C 1.53095 * 109.47844 * 175.05384 * 13 12 10 16 16 C 1.53183 * 109.16399 * 177.59043 * 15 13 12 17 17 C 1.53176 * 109.03371 * 303.02206 * 16 15 13 18 18 C 1.53086 * 109.16241 * 56.98131 * 17 16 15 19 19 O 1.42900 * 109.41623 * 302.38418 * 18 17 16 20 20 H 0.97005 * 120.00032 * 179.97438 * 1 2 3 21 21 H 0.96991 * 119.99873 * 359.97438 * 9 7 2 22 22 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 23 23 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 24 24 H 1.09000 * 109.52575 * 297.49500 * 15 13 12 25 25 H 1.09002 * 109.52486 * 57.68668 * 15 13 12 26 26 H 1.08994 * 109.54289 * 183.15180 * 16 15 13 27 27 H 1.08999 * 109.53966 * 62.89092 * 16 15 13 28 28 H 1.08997 * 109.52335 * 297.07173 * 17 16 15 29 29 H 1.08998 * 109.56740 * 176.91458 * 17 16 15 30 30 H 1.09008 * 109.48151 * 182.40650 * 18 17 16 31 31 H 1.08998 * 109.49429 * 62.37751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.6999 7 6 2.0088 -1.2034 0.0056 8 1 3.0889 -1.2034 0.0060 9 7 1.3233 -2.3907 0.0117 10 6 1.9972 -3.5579 0.0177 11 8 3.2101 -3.5579 0.0172 12 6 1.2436 -4.8629 0.0238 13 6 2.2379 -6.0258 0.0292 14 1 2.9219 -5.9154 0.8708 15 6 1.4767 -7.3477 0.1599 16 6 2.4734 -8.5096 0.1040 17 6 3.2686 -8.4232 -1.2023 18 6 3.9606 -7.0599 -1.2802 19 8 2.9803 -6.0239 -1.1918 20 1 -0.4850 -0.8401 -0.0004 21 1 0.3534 -2.3906 0.0125 22 1 0.6167 -4.9163 0.9139 23 1 0.6173 -4.9251 -0.8660 24 1 0.9450 -7.3694 1.1111 25 1 0.7636 -7.4399 -0.6593 26 1 1.9331 -9.4555 0.1402 27 1 3.1560 -8.4454 0.9514 28 1 2.5917 -8.5371 -2.0490 29 1 4.0183 -9.2141 -1.2263 30 1 4.4933 -6.9762 -2.2276 31 1 4.6672 -6.9630 -0.4560 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087263057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:12 Heat of formation + Delta-G solvation = -127.237099 kcal Electronic energy + Delta-G solvation = -14378.716561 eV Core-core repulsion = 11851.334464 eV Total energy + Delta-G solvation = -2527.382097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.79584 -39.62746 -36.37654 -34.50121 -33.79120 -32.98219 -29.40650 -26.61615 -25.20154 -23.60971 -21.32294 -21.15129 -19.95173 -17.99862 -17.46484 -17.06293 -16.50095 -15.72412 -15.51726 -15.49758 -15.26922 -14.87872 -13.91949 -13.52197 -13.38926 -13.23501 -12.99942 -12.69110 -12.16345 -11.95547 -11.94376 -11.88066 -11.63403 -11.51451 -11.23950 -10.42983 -10.24003 -10.09108 -8.92925 -6.06115 1.52031 1.54506 1.82046 2.03995 2.42618 2.89158 3.02655 3.18160 3.79686 3.89932 3.94987 4.02405 4.19088 4.23647 4.44311 4.49384 4.59609 4.71876 4.77419 4.90976 4.97896 5.09098 5.12608 5.18246 5.40026 5.63130 5.96614 6.41395 6.58684 6.76141 7.45645 7.95490 8.55198 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071679 B = 0.006397 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.537117 B = 4375.925593 C = 4631.060482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.043 4.043 3 Si 1.137 2.863 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.443 3.557 11 O -0.621 6.621 12 C -0.119 4.119 13 C 0.109 3.891 14 H 0.039 0.961 15 C -0.143 4.143 16 C -0.121 4.121 17 C -0.148 4.148 18 C 0.051 3.949 19 O -0.400 6.400 20 H 0.259 0.741 21 H 0.385 0.615 22 H 0.124 0.876 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 -15.600 0.137 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.241 4.241 3 Si 0.957 3.043 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.088 0.912 9 N -0.230 5.230 10 C 0.232 3.768 11 O -0.507 6.507 12 C -0.159 4.159 13 C 0.051 3.949 14 H 0.057 0.943 15 C -0.181 4.181 16 C -0.158 4.158 17 C -0.186 4.186 18 C -0.025 4.025 19 O -0.320 6.320 20 H 0.070 0.930 21 H 0.219 0.781 22 H 0.142 0.858 23 H 0.119 0.881 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.246 -13.813 -0.009 13.869 hybrid contribution -0.140 -1.646 0.134 1.657 sum 1.106 -15.458 0.125 15.498 Atomic orbital electron populations 1.70938 1.06926 1.29470 1.48373 1.27850 0.96727 1.05304 0.94211 0.82586 0.73534 0.70135 0.78090 1.19412 1.20521 1.19578 1.20556 0.93803 0.85909 1.53858 0.91247 1.42047 1.08562 1.05552 1.66840 1.20960 0.88290 0.86164 0.81386 1.90492 1.16128 1.88056 1.56046 1.21653 0.98430 0.90135 1.05644 1.21772 0.92108 0.94159 0.86837 0.94298 1.22208 0.98740 0.93153 1.03997 1.21616 0.98034 0.98759 0.97424 1.22163 1.00709 0.96818 0.98900 1.22705 0.90450 0.87510 1.01852 1.87971 1.52241 1.53317 1.38439 0.93003 0.78111 0.85836 0.88067 0.88986 0.90380 0.89040 0.91937 0.90973 0.88909 0.88864 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 13.68 21.66 0.30 -52.25 16 2 C -0.04 -2.42 5.50 84.93 0.47 -1.95 16 3 Si 1.14 50.07 29.92 68.60 2.05 52.13 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.41 -24.61 9.68 84.04 0.81 -23.79 16 8 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 9 N -0.59 -31.59 5.28 -306.98 -1.62 -33.21 16 10 C 0.44 22.38 7.66 87.66 0.67 23.05 16 11 O -0.62 -36.76 15.00 10.72 0.16 -36.59 16 12 C -0.12 -4.22 5.41 29.85 0.16 -4.06 16 13 C 0.11 3.64 2.19 30.63 0.07 3.71 16 14 H 0.04 1.45 7.96 -2.38 -0.02 1.43 16 15 C -0.14 -3.22 5.42 30.69 0.17 -3.05 16 16 C -0.12 -2.29 6.03 30.71 0.19 -2.10 16 17 C -0.15 -2.99 6.14 30.68 0.19 -2.80 16 18 C 0.05 1.46 6.84 72.01 0.49 1.96 16 19 O -0.40 -15.18 9.64 -135.19 -1.30 -16.48 16 20 H 0.26 14.37 6.78 -92.70 -0.63 13.74 16 21 H 0.38 18.75 6.73 -92.72 -0.62 18.13 16 22 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 23 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -74.64 259.75 3.43 -71.20 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.63 Total: 24.24 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 3.21 Total: -9.03 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.33 Total: -85.46 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.14 Total: -53.08 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.13 kcal Total: -74.64 3.43 -71.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087263057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.034 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds