Wall clock time and date at job start Sun Mar 29 2020 22:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48504 * 109.47172 * 270.00240 * 3 2 1 5 5 H 1.48497 * 109.47309 * 30.00397 * 3 2 1 6 6 H 1.48503 * 109.46599 * 150.00428 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00002 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47347 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00337 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00047 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00107 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.47068 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.27448 * 54.30240 * 14 13 11 16 16 C 1.54945 * 110.39100 * 176.44832 * 14 13 11 17 17 C 1.55304 * 100.94045 * 155.40253 * 16 14 13 18 18 C 1.54376 * 102.25567 * 325.86882 * 17 16 14 19 19 O 1.43240 * 107.58930 * 21.35352 * 18 17 16 20 20 H 0.97001 * 120.00013 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47581 * 59.99410 * 9 7 2 22 22 H 1.08997 * 109.47100 * 299.99572 * 9 7 2 23 23 H 0.97001 * 119.99738 * 359.97438 * 10 9 7 24 24 H 1.09005 * 109.47032 * 60.00609 * 13 11 10 25 25 H 1.08997 * 109.47366 * 300.00341 * 13 11 10 26 26 H 1.08997 * 111.12470 * 273.31972 * 16 14 13 27 27 H 1.08995 * 111.12619 * 37.48960 * 16 14 13 28 28 H 1.08998 * 110.85543 * 207.67443 * 17 16 14 29 29 H 1.09009 * 111.02412 * 84.13543 * 17 16 14 30 30 H 1.08999 * 109.83271 * 261.84174 * 18 17 16 31 31 H 1.09003 * 109.83223 * 140.86572 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3248 -2.8216 -0.0020 12 8 6.1130 -1.8998 -0.0034 13 6 5.8271 -4.2425 -0.0013 14 6 7.3571 -4.2425 -0.0033 15 1 7.7360 -3.6451 0.8260 16 6 7.8971 -5.6920 0.0874 17 6 9.2985 -5.5256 -0.5609 18 6 9.0376 -4.4457 -1.6328 19 8 7.8541 -3.7345 -1.2516 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8744 -0.6802 -0.8911 23 1 3.3694 -3.3125 -0.0002 24 1 5.4630 -4.7570 -0.8906 25 1 5.4645 -4.7556 0.8894 26 1 7.9801 -6.0161 1.1247 27 1 7.2771 -6.3789 -0.4885 28 1 9.6264 -6.4577 -1.0211 29 1 10.0288 -5.1780 0.1700 30 1 8.8888 -4.9172 -2.6042 31 1 9.8828 -3.7590 -1.6794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088262093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:24 Heat of formation + Delta-G solvation = -96.047698 kcal Electronic energy + Delta-G solvation = -14040.881638 eV Core-core repulsion = 11514.852015 eV Total energy + Delta-G solvation = -2526.029623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.69407 -38.34123 -34.20670 -32.45335 -32.19904 -31.59865 -28.21698 -26.22333 -22.44566 -21.73215 -21.05959 -19.66711 -17.28338 -16.83323 -15.99119 -15.77487 -15.09565 -14.86701 -14.29267 -14.02088 -13.39540 -13.07325 -12.61960 -12.41861 -12.29061 -11.81737 -11.66476 -11.31165 -11.15342 -10.92410 -10.89331 -10.70843 -9.93080 -9.44971 -9.40279 -9.06683 -8.73546 -8.05145 -6.18097 -4.19818 3.29774 3.36602 3.36733 3.46102 3.83523 4.05670 4.37080 4.37363 4.69638 4.83120 5.09497 5.17359 5.17791 5.24405 5.48267 5.53705 5.57159 5.66185 5.75036 5.84133 5.91079 6.15494 6.88261 7.13828 7.16704 7.31435 7.46205 8.19589 8.59476 8.79832 9.05236 9.42950 10.93940 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070029 B = 0.005883 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.737175 B = 4758.279496 C = 5008.295392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.220 3.780 10 N -0.710 5.710 11 C 0.500 3.500 12 O -0.548 6.548 13 C -0.143 4.143 14 C 0.099 3.901 15 H 0.077 0.923 16 C -0.154 4.154 17 C -0.156 4.156 18 C 0.048 3.952 19 O -0.363 6.363 20 H 0.267 0.733 21 H 0.024 0.976 22 H 0.020 0.980 23 H 0.395 0.605 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.936 -12.396 0.021 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.359 5.359 11 C 0.285 3.715 12 O -0.427 6.427 13 C -0.183 4.183 14 C 0.041 3.959 15 H 0.095 0.905 16 C -0.191 4.191 17 C -0.193 4.193 18 C -0.029 4.029 19 O -0.283 6.283 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.038 0.962 23 H 0.228 0.772 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.219 -11.417 -0.097 19.026 hybrid contribution 0.060 0.320 0.054 0.330 sum 15.279 -11.097 -0.043 18.884 Atomic orbital electron populations 1.69885 1.06214 1.27378 1.49672 1.24799 0.94783 0.99181 0.93885 0.86810 0.80564 0.83202 0.79077 1.19842 1.20938 1.18510 1.21115 0.88618 0.95188 1.53089 0.90288 1.19461 0.95112 0.78957 0.96686 1.46183 1.05791 1.10860 1.73065 1.20402 0.83046 0.90788 0.77258 1.90667 1.55436 1.46283 1.50269 1.21866 0.95478 0.96344 1.04591 1.22681 0.92649 0.92499 0.88041 0.90464 1.23346 0.96224 0.97461 1.02096 1.23103 0.97737 0.99730 0.98749 1.23101 0.88774 0.93507 0.97554 1.88597 1.41744 1.59354 1.38567 0.92310 0.95844 0.96240 0.77153 0.88585 0.88038 0.89833 0.90171 0.90252 0.90608 0.91670 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.54 -15.22 9.83 -34.44 -0.34 -15.56 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.62 4.50 -5.20 -0.02 5.60 16 10 N -0.71 -14.93 5.55 -61.48 -0.34 -15.27 16 11 C 0.50 9.97 7.74 -10.98 -0.09 9.89 16 12 O -0.55 -13.23 15.56 -4.41 -0.07 -13.30 16 13 C -0.14 -1.98 5.45 -27.88 -0.15 -2.13 16 14 C 0.10 1.35 2.91 -25.70 -0.07 1.28 16 15 H 0.08 1.15 7.96 -51.93 -0.41 0.73 16 16 C -0.15 -1.42 6.57 -24.48 -0.16 -1.59 16 17 C -0.16 -1.35 7.02 -24.79 -0.17 -1.52 16 18 C 0.05 0.54 7.79 37.88 0.30 0.84 16 19 O -0.36 -5.87 10.50 -45.20 -0.47 -6.34 16 20 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 22 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 23 H 0.40 7.22 8.32 -40.82 -0.34 6.88 16 24 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 263.32 15.07 3.97 3.97 Total: -1.00 -34.02 263.32 -6.10 -40.12 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.48 Total: 0.76 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.81 Total: -1.07 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.43 Total: -41.43 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.54 Total: -19.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.02 -6.10 -40.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088262093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.930 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds