Wall clock time and date at job start Sun Mar 29 2020 22:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48504 * 109.47172 * 270.00240 * 3 2 1 5 5 H 1.48497 * 109.47309 * 30.00397 * 3 2 1 6 6 H 1.48503 * 109.46599 * 150.00428 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00002 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47347 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00337 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00047 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00107 * 179.97438 * 11 10 9 14 14 C 1.53004 * 109.47068 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.27448 * 54.30240 * 14 13 11 16 16 C 1.54945 * 110.39100 * 176.44832 * 14 13 11 17 17 C 1.55304 * 100.94045 * 155.40253 * 16 14 13 18 18 C 1.54376 * 102.25567 * 325.86882 * 17 16 14 19 19 O 1.43240 * 107.58930 * 21.35352 * 18 17 16 20 20 H 0.97001 * 120.00013 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47581 * 59.99410 * 9 7 2 22 22 H 1.08997 * 109.47100 * 299.99572 * 9 7 2 23 23 H 0.97001 * 119.99738 * 359.97438 * 10 9 7 24 24 H 1.09005 * 109.47032 * 60.00609 * 13 11 10 25 25 H 1.08997 * 109.47366 * 300.00341 * 13 11 10 26 26 H 1.08997 * 111.12470 * 273.31972 * 16 14 13 27 27 H 1.08995 * 111.12619 * 37.48960 * 16 14 13 28 28 H 1.08998 * 110.85543 * 207.67443 * 17 16 14 29 29 H 1.09009 * 111.02412 * 84.13543 * 17 16 14 30 30 H 1.08999 * 109.83271 * 261.84174 * 18 17 16 31 31 H 1.09003 * 109.83223 * 140.86572 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3248 -2.8216 -0.0020 12 8 6.1130 -1.8998 -0.0034 13 6 5.8271 -4.2425 -0.0013 14 6 7.3571 -4.2425 -0.0033 15 1 7.7360 -3.6451 0.8260 16 6 7.8971 -5.6920 0.0874 17 6 9.2985 -5.5256 -0.5609 18 6 9.0376 -4.4457 -1.6328 19 8 7.8541 -3.7345 -1.2516 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8744 -0.6802 -0.8911 23 1 3.3694 -3.3125 -0.0002 24 1 5.4630 -4.7570 -0.8906 25 1 5.4645 -4.7556 0.8894 26 1 7.9801 -6.0161 1.1247 27 1 7.2771 -6.3789 -0.4885 28 1 9.6264 -6.4577 -1.0211 29 1 10.0288 -5.1780 0.1700 30 1 8.8888 -4.9172 -2.6042 31 1 9.8828 -3.7590 -1.6794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088262093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:24 Heat of formation + Delta-G solvation = -121.671243 kcal Electronic energy + Delta-G solvation = -14041.992758 eV Core-core repulsion = 11514.852015 eV Total energy + Delta-G solvation = -2527.140743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.91947 -39.72749 -36.13795 -34.41285 -33.33675 -32.60549 -30.06135 -27.43578 -24.22589 -22.67282 -22.22821 -21.25708 -19.13416 -17.99538 -17.46912 -17.20924 -16.47519 -16.30699 -15.96582 -15.45615 -14.83106 -14.49070 -14.24302 -13.99862 -13.63164 -13.10066 -12.95525 -12.68362 -12.56358 -12.12209 -12.04600 -11.94499 -11.66074 -11.63023 -10.93011 -10.73507 -10.41619 -9.90039 -8.41314 -6.47938 1.31088 1.33097 1.46235 1.80376 2.27011 2.50728 2.93912 2.96371 3.60249 3.81796 4.00138 4.05262 4.22871 4.32793 4.55048 4.67474 4.70165 4.86167 4.86864 4.93782 5.01414 5.05095 5.09632 5.25723 5.32041 5.55771 6.08881 6.23325 6.52985 6.88425 7.15534 7.47619 8.73449 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070029 B = 0.005883 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.737175 B = 4758.279496 C = 5008.295392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.710 5.710 11 C 0.495 3.505 12 O -0.594 6.594 13 C -0.130 4.130 14 C 0.088 3.912 15 H 0.055 0.945 16 C -0.141 4.141 17 C -0.148 4.148 18 C 0.035 3.965 19 O -0.407 6.407 20 H 0.273 0.727 21 H 0.010 0.990 22 H 0.005 0.995 23 H 0.409 0.591 24 H 0.117 0.883 25 H 0.140 0.860 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.089 -13.947 0.203 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.107 3.893 10 N -0.360 5.360 11 C 0.283 3.717 12 O -0.476 6.476 13 C -0.169 4.169 14 C 0.030 3.970 15 H 0.073 0.927 16 C -0.178 4.178 17 C -0.185 4.185 18 C -0.041 4.041 19 O -0.328 6.328 20 H 0.082 0.918 21 H 0.028 0.972 22 H 0.023 0.977 23 H 0.245 0.755 24 H 0.135 0.865 25 H 0.158 0.842 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.370 -13.010 0.085 20.910 hybrid contribution -0.293 0.764 -0.025 0.818 sum 16.077 -12.247 0.061 20.210 Atomic orbital electron populations 1.69975 1.07584 1.28618 1.50719 1.25577 0.95536 1.02567 0.93575 0.85876 0.79183 0.79528 0.79399 1.19145 1.19466 1.18828 1.21299 0.89862 0.94674 1.52579 0.92060 1.19055 0.93429 0.81517 0.95287 1.46070 1.06959 1.09478 1.73483 1.21519 0.81849 0.93109 0.75240 1.90642 1.56369 1.48499 1.52042 1.21943 0.95773 0.91912 1.07315 1.22819 0.92292 0.95135 0.86719 0.92652 1.23321 0.96227 0.94395 1.03858 1.23109 0.97668 0.99793 0.97960 1.23339 0.87392 0.94262 0.99118 1.88553 1.43491 1.61178 1.39534 0.91796 0.97185 0.97724 0.75499 0.86527 0.84228 0.87643 0.88594 0.87635 0.90153 0.90598 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.96 21.45 0.30 -55.98 16 2 C 0.03 1.61 5.47 84.65 0.46 2.07 16 3 Si 0.94 45.39 27.47 68.60 1.88 47.27 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -12.83 6.54 99.48 0.65 -12.18 16 7 C -0.55 -30.95 9.83 25.60 0.25 -30.70 16 8 H 0.06 3.61 7.84 -2.91 -0.02 3.58 16 9 C 0.23 11.88 4.50 85.63 0.38 12.27 16 10 N -0.71 -29.53 5.55 -466.80 -2.59 -32.12 16 11 C 0.49 19.42 7.74 87.66 0.68 20.10 16 12 O -0.59 -29.04 15.56 6.50 0.10 -28.93 16 13 C -0.13 -3.29 5.45 29.85 0.16 -3.13 16 14 C 0.09 2.25 2.91 31.26 0.09 2.34 16 15 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 16 C -0.14 -2.09 6.57 32.05 0.21 -1.88 16 17 C -0.15 -2.10 7.02 31.85 0.22 -1.87 16 18 C 0.04 0.75 7.79 72.45 0.56 1.32 16 19 O -0.41 -12.89 10.50 -139.45 -1.46 -14.36 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.01 0.55 7.20 -2.38 -0.02 0.53 16 22 H 0.00 0.26 7.57 -2.39 -0.02 0.24 16 23 H 0.41 14.55 8.32 -92.71 -0.77 13.78 16 24 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 25 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.16 8.06 -2.39 -0.02 1.14 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.68 263.32 1.55 -73.13 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.29 Total: 10.48 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 3.03 Total: 0.52 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -2.29 Total: -88.10 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -1.36 Total: -43.29 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Total: -74.68 1.55 -73.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088262093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.542 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds