Wall clock time and date at job start Sun Mar 29 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.46936 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.82158 * 305.56557 * 14 13 11 16 16 C 1.54389 * 109.82768 * 184.59043 * 14 13 11 17 17 C 1.55306 * 102.24992 * 219.12915 * 16 14 13 18 18 C 1.54942 * 100.94404 * 34.13117 * 17 16 14 19 19 O 1.43236 * 109.83624 * 66.45558 * 14 13 11 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 22 22 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 23 23 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 24 24 H 1.08995 * 109.46839 * 300.00362 * 13 11 10 25 25 H 1.08998 * 109.46706 * 59.99946 * 13 11 10 26 26 H 1.08995 * 110.84672 * 337.31878 * 16 14 13 27 27 H 1.09002 * 110.84829 * 100.93965 * 16 14 13 28 28 H 1.09001 * 111.11968 * 276.21178 * 17 16 14 29 29 H 1.08999 * 111.15739 * 152.06756 * 17 16 14 30 30 H 1.08998 * 110.31266 * 204.63798 * 18 17 16 31 31 H 1.08997 * 110.31158 * 82.46778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5616 -5.1050 0.0017 13 6 2.7334 -6.0287 0.0032 14 6 1.9684 -7.3537 0.0033 15 1 1.2668 -7.3754 0.8372 16 6 2.9603 -8.5311 0.1203 17 6 2.3402 -9.5811 -0.8415 18 6 1.7430 -8.6611 -1.9359 19 8 1.2597 -7.5059 -1.2321 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6248 -2.5571 -0.8896 23 1 3.1569 -3.4353 0.0028 24 1 3.3600 -5.9714 -0.8867 25 1 3.3600 -5.9704 0.8932 26 1 3.9540 -8.2359 -0.2163 27 1 2.9923 -8.9114 1.1413 28 1 1.5601 -10.1572 -0.3438 29 1 3.1065 -10.2369 -1.2548 30 1 0.9217 -9.1642 -2.4463 31 1 2.5140 -8.3735 -2.6506 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088262096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:27 Heat of formation + Delta-G solvation = -129.839848 kcal Electronic energy + Delta-G solvation = -14052.351882 eV Core-core repulsion = 11524.856922 eV Total energy + Delta-G solvation = -2527.494961 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.02342 -39.77468 -36.42058 -34.47134 -33.33667 -32.54710 -29.23645 -27.27641 -24.82868 -22.87029 -22.20867 -21.22300 -19.37253 -18.06170 -17.69089 -16.90486 -16.60037 -16.28840 -15.62986 -15.27102 -14.76820 -14.52585 -14.40485 -14.01024 -13.81733 -13.12371 -12.84056 -12.59387 -12.54956 -12.18175 -12.02822 -11.89244 -11.68776 -11.02603 -10.77482 -10.75241 -10.49236 -9.95713 -8.81976 -6.57430 1.54945 1.64806 1.73480 1.82312 2.40060 2.58712 2.98386 3.06788 3.56488 3.75626 3.92860 4.00599 4.21597 4.29382 4.49218 4.58761 4.70478 4.82145 4.84713 4.91602 4.93336 4.99071 5.06888 5.29630 5.46266 5.53665 6.06631 6.21919 6.28701 6.81885 7.24368 7.44927 8.57208 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.081357 B = 0.005403 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.081504 B = 5181.148509 C = 5322.164529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.035 4.035 3 Si 1.135 2.865 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.285 1.285 7 C -0.629 4.629 8 H 0.078 0.922 9 C 0.252 3.748 10 N -0.709 5.709 11 C 0.491 3.509 12 O -0.598 6.598 13 C -0.138 4.138 14 C 0.087 3.913 15 H 0.060 0.940 16 C -0.139 4.139 17 C -0.147 4.147 18 C 0.031 3.969 19 O -0.407 6.407 20 H 0.252 0.748 21 H -0.019 1.019 22 H -0.023 1.023 23 H 0.409 0.591 24 H 0.116 0.884 25 H 0.137 0.863 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.436 -17.030 -0.447 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.233 4.233 3 Si 0.954 3.046 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.667 4.667 8 H 0.096 0.904 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.479 6.479 13 C -0.178 4.178 14 C 0.029 3.971 15 H 0.078 0.922 16 C -0.177 4.177 17 C -0.184 4.184 18 C -0.045 4.045 19 O -0.327 6.327 20 H 0.061 0.939 21 H -0.001 1.001 22 H -0.005 1.005 23 H 0.245 0.755 24 H 0.134 0.866 25 H 0.155 0.845 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.244 -15.429 -0.522 19.098 hybrid contribution -0.169 -1.561 -0.011 1.570 sum 11.074 -16.989 -0.533 20.287 Atomic orbital electron populations 1.70879 1.08360 1.29841 1.47561 1.27745 0.96330 1.07345 0.91843 0.82735 0.74123 0.69734 0.78021 1.19433 1.18351 1.21074 1.22465 0.95609 0.91669 1.56939 0.90428 1.18648 0.89527 0.86000 0.93020 1.46101 1.10902 1.05381 1.73526 1.21688 0.90205 0.85037 0.75180 1.90647 1.19764 1.85516 1.51975 1.22194 0.97397 0.91101 1.07073 1.22594 0.93398 0.94009 0.87058 0.92202 1.23200 0.99008 0.93098 1.02369 1.23254 1.01422 0.97861 0.95887 1.23664 0.99338 0.85880 0.95590 1.88625 1.61912 1.48172 1.33976 0.93860 1.00134 1.00511 0.75466 0.86613 0.84524 0.88083 0.88045 0.90431 0.87158 0.89817 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.36 13.65 21.45 0.29 -59.07 16 2 C -0.03 -1.99 5.46 84.65 0.46 -1.53 16 3 Si 1.14 48.79 29.90 68.60 2.05 50.84 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.63 -35.64 9.28 25.60 0.24 -35.41 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.25 14.41 4.74 85.63 0.41 14.82 16 10 N -0.71 -31.60 5.55 -466.78 -2.59 -34.19 16 11 C 0.49 20.86 7.72 87.66 0.68 21.53 16 12 O -0.60 -31.94 15.49 8.85 0.14 -31.80 16 13 C -0.14 -3.72 5.27 29.85 0.16 -3.56 16 14 C 0.09 2.38 3.04 31.06 0.09 2.47 16 15 H 0.06 1.89 7.95 -2.39 -0.02 1.87 16 16 C -0.14 -2.15 6.54 31.86 0.21 -1.94 16 17 C -0.15 -2.16 7.16 32.05 0.23 -1.93 16 18 C 0.03 0.68 7.78 72.65 0.56 1.24 16 19 O -0.41 -13.60 10.36 -137.10 -1.42 -15.02 16 20 H 0.25 16.81 7.22 -92.70 -0.67 16.14 16 21 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 22 H -0.02 -1.47 8.01 -2.39 -0.02 -1.49 16 23 H 0.41 14.99 8.32 -92.71 -0.77 14.21 16 24 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.10 1.15 7.85 -2.39 -0.02 1.13 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.34 265.21 1.95 -78.39 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.45 Total: 15.16 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 3.04 Total: -4.30 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.30 Total: -93.26 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.28 Total: -46.83 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Total: -80.34 1.95 -78.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088262096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.453 kcal (2) G-P(sol) polarization free energy of solvation -80.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds