Wall clock time and date at job start Sun Mar 29 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21623 * 120.00244 * 359.72094 * 11 10 9 13 13 C 1.47169 * 119.99709 * 179.72413 * 11 10 9 14 14 C 1.38247 * 128.47463 * 179.97438 * 13 11 10 15 15 N 1.31238 * 111.88765 * 180.02562 * 14 13 11 16 16 N 1.27340 * 120.03995 * 359.97438 * 15 14 13 17 17 S 1.56637 * 109.73894 * 359.69748 * 16 15 14 18 18 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 19 19 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 20 20 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 21 21 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 22 22 H 1.07992 * 124.05656 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5582 -5.1056 -0.0046 13 6 2.7104 -6.0018 -0.0086 14 6 2.4468 -7.3589 -0.0140 15 7 3.5489 -8.0714 -0.0168 16 7 4.6827 -7.4917 -0.0149 17 16 4.4826 -5.9382 -0.0171 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8898 20 1 0.6241 -2.5567 0.8902 21 1 3.1569 -3.4353 0.0021 22 1 1.4532 -7.7820 -0.0158 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088330052.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:23 Heat of formation + Delta-G solvation = 29.473371 kcal Electronic energy + Delta-G solvation = -11337.607025 eV Core-core repulsion = 9020.399837 eV Total energy + Delta-G solvation = -2317.207188 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.031 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.75085 -38.86580 -34.47347 -32.59561 -31.92135 -28.25083 -26.74609 -23.56233 -21.82102 -20.27136 -19.10304 -17.62998 -16.01143 -15.82722 -15.48138 -14.83848 -14.42824 -14.32354 -13.32562 -12.64194 -12.13592 -12.06909 -11.94346 -11.08152 -10.97796 -10.43522 -10.27823 -10.06196 -9.78188 -9.64608 -9.52567 -8.88919 -8.15899 -6.27194 -4.35345 -0.20537 0.85114 1.50475 2.02686 3.18818 3.25138 3.27236 3.38980 3.60625 4.07221 4.26587 4.77275 5.09539 5.18251 5.61161 7.06027 7.08652 7.33065 7.48134 7.62643 7.81662 8.29774 8.52245 8.76764 9.31326 10.82793 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.059210 B = 0.006924 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.780192 B = 4042.695135 C = 4500.324613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.696 5.696 11 C 0.579 3.421 12 O -0.529 6.529 13 C -0.262 4.262 14 C 0.058 3.942 15 N -0.254 5.254 16 N -0.270 5.270 17 S 0.413 5.587 18 H 0.268 0.732 19 H 0.034 0.966 20 H 0.034 0.966 21 H 0.391 0.609 22 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 -8.197 -0.035 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.344 5.344 11 C 0.360 3.640 12 O -0.407 6.407 13 C -0.404 4.404 14 C -0.108 4.108 15 N -0.119 5.119 16 N -0.251 5.251 17 S 0.547 5.453 18 H 0.077 0.923 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.224 0.776 22 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.789 -8.609 -0.035 12.303 hybrid contribution -0.680 1.014 -0.005 1.221 sum 8.109 -7.595 -0.040 11.110 Atomic orbital electron populations 1.69960 1.06131 1.27567 1.48364 1.24947 0.94949 0.99545 0.94453 0.86377 0.79624 0.82396 0.78322 1.20364 1.20923 1.19645 1.21174 0.93356 0.90169 1.53972 0.91674 1.19289 0.88083 0.81388 0.98394 1.46484 1.11528 1.05518 1.70897 1.16623 0.86567 0.81797 0.78980 1.90822 1.14752 1.84186 1.50986 1.28501 0.99268 0.99747 1.12850 1.24427 0.99642 0.88260 0.98477 1.70663 0.93518 1.32210 1.15464 1.78811 1.20466 1.05058 1.20801 1.82648 0.99905 1.11911 1.50850 0.92265 0.94804 0.94792 0.77569 0.76887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 13.29 55.43 0.74 -24.19 14 2 C 0.07 1.73 5.46 -17.82 -0.10 1.64 14 3 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 14 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 14 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 14 7 C -0.55 -14.07 9.28 -34.44 -0.32 -14.39 14 8 H 0.07 1.55 7.60 -52.49 -0.40 1.15 14 9 C 0.25 6.16 5.43 -5.19 -0.03 6.13 14 10 N -0.70 -13.68 5.54 -62.64 -0.35 -14.03 14 11 C 0.58 10.94 7.80 -12.63 -0.10 10.84 14 12 O -0.53 -11.86 16.98 5.26 0.09 -11.77 14 13 C -0.26 -3.89 6.81 -35.95 -0.25 -4.13 14 14 C 0.06 0.79 11.55 -17.80 -0.21 0.59 14 15 N -0.25 -3.65 11.54 30.36 0.35 -3.30 14 16 N -0.27 -3.76 12.51 60.35 0.75 -3.00 14 17 S 0.41 4.96 23.05 -107.50 -2.48 2.48 14 18 H 0.27 7.09 8.31 -40.82 -0.34 6.75 14 19 H 0.03 0.92 8.14 -51.92 -0.42 0.50 14 20 H 0.03 0.93 8.14 -51.93 -0.42 0.50 14 21 H 0.39 6.51 7.75 -40.82 -0.32 6.20 14 22 H 0.21 2.45 8.06 -52.49 -0.42 2.02 14 LS Contribution 228.09 15.07 3.44 3.44 Total: -1.00 -29.94 228.09 -4.59 -34.53 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -1.12 Total: 0.20 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.99 Total: 0.68 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 1.49 Total: -44.51 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.48 Total: 2.48 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.94 -4.59 -34.53 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088330052.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.006 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds