Wall clock time and date at job start Sun Mar 29 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46911 * 109.47140 * 2 1 4 4 C 1.44250 * 110.99812 * 66.04706 * 3 2 1 5 5 C 1.54246 * 108.64092 * 219.84891 * 4 3 2 6 6 C 1.46136 * 111.90203 * 281.38083 * 5 4 3 7 7 N 1.48108 * 112.19147 * 60.87002 * 6 5 4 8 8 C 1.46894 * 111.00325 * 156.48879 * 7 6 5 9 9 C 1.50701 * 109.47264 * 66.03971 * 8 7 6 10 10 H 1.08001 * 120.00098 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99843 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99847 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00056 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47177 * 89.99890 * 13 11 9 15 15 H 1.48499 * 109.47006 * 209.99993 * 13 11 9 16 16 H 1.48498 * 109.47222 * 329.99655 * 13 11 9 17 17 C 1.44265 * 109.97523 * 279.71706 * 7 6 5 18 18 C 1.48194 * 110.99671 * 194.28655 * 3 2 1 19 19 H 1.09001 * 109.46889 * 299.99838 * 1 2 3 20 20 H 1.08997 * 109.47402 * 60.00000 * 1 2 3 21 21 H 1.08996 * 109.47378 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47305 * 240.00495 * 2 1 3 23 23 H 1.08997 * 109.47402 * 120.00000 * 2 1 3 24 24 H 1.09001 * 109.60634 * 100.09627 * 4 3 2 25 25 H 1.08998 * 109.61066 * 339.59715 * 4 3 2 26 26 H 1.08999 * 108.99103 * 160.75996 * 5 4 3 27 27 H 1.08996 * 108.99661 * 42.00255 * 5 4 3 28 28 H 1.09011 * 108.93841 * 181.56490 * 6 5 4 29 29 H 1.09000 * 108.94033 * 300.16670 * 6 5 4 30 30 H 1.08994 * 109.47152 * 186.04283 * 8 7 6 31 31 H 1.09004 * 109.47146 * 306.04471 * 8 7 6 32 32 H 0.96995 * 120.00081 * 180.02562 * 12 11 9 33 33 H 1.08993 * 108.86680 * 333.10661 * 17 7 6 34 34 H 1.08994 * 108.78253 * 214.63728 * 17 7 6 35 35 H 1.09003 * 108.82684 * 312.52933 * 18 3 2 36 36 H 1.09002 * 108.82807 * 70.94640 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6765 2.0547 1.2307 5 6 1.2554 3.5021 0.9037 6 6 2.4102 4.3647 0.6635 7 7 3.2233 3.9039 -0.4856 8 6 4.0032 5.0103 -1.0560 9 6 5.0289 5.4715 -0.0529 10 1 5.0952 4.9905 0.9118 11 6 5.8836 6.5069 -0.3672 12 7 6.7791 6.9090 0.5080 13 14 5.7695 7.3384 -2.0360 14 1 4.8187 8.4764 -1.9580 15 1 7.1101 7.8395 -2.4319 16 1 5.2890 6.3602 -3.0446 17 6 4.0845 2.8210 -0.0771 18 6 3.4607 1.4388 -0.3414 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.5412 2.0662 1.8943 25 1 0.8496 1.5331 1.7127 26 1 0.6816 3.9020 1.7397 27 1 0.6259 3.4960 0.0139 28 1 2.0599 5.3778 0.4653 29 1 3.0348 4.3766 1.5567 30 1 4.5069 4.6710 -1.9610 31 1 3.3361 5.8373 -1.2998 32 1 7.3800 7.6376 0.2871 33 1 4.2901 2.9170 0.9889 34 1 5.0241 2.8942 -0.6247 35 1 3.9909 0.6944 0.2527 36 1 3.5814 1.1963 -1.3973 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108294177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:51 Heat of formation + Delta-G solvation = 12.449715 kcal Electronic energy + Delta-G solvation = -14976.709843 eV Core-core repulsion = 12688.936778 eV Total energy + Delta-G solvation = -2287.773065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.89168 -36.02529 -32.80792 -31.99953 -30.91230 -28.05758 -25.75168 -25.27829 -22.09295 -21.76941 -19.76146 -19.18833 -16.79081 -16.04650 -15.40214 -14.69056 -14.40196 -14.24501 -13.66198 -13.09795 -13.03595 -12.47579 -12.44274 -12.04054 -11.84742 -11.59380 -11.33103 -11.02767 -10.87438 -10.55512 -10.25042 -10.24276 -10.15166 -9.88294 -9.84252 -9.42569 -8.58838 -7.78120 -7.12585 -6.09984 -4.09733 3.28989 3.36472 3.41280 4.17159 4.40938 4.93853 5.12346 5.24233 5.28392 5.40882 5.53924 5.58428 5.72045 5.76542 5.84991 5.86833 5.96972 6.12002 6.22874 6.29134 6.35030 6.42001 6.56676 6.67191 6.79516 6.93786 7.01749 7.15734 7.48607 7.59249 7.67060 8.16232 8.27579 8.46742 8.92917 9.53643 11.03165 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055839 B = 0.007507 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.321228 B = 3728.864843 C = 3775.821411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 N -0.539 5.539 4 C 0.067 3.933 5 C -0.107 4.107 6 C 0.065 3.935 7 N -0.516 5.516 8 C 0.154 3.846 9 C -0.551 4.551 10 H 0.072 0.928 11 C 0.071 3.929 12 N -0.900 5.900 13 Si 0.879 3.121 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.263 1.263 17 C 0.068 3.932 18 C 0.073 3.927 19 H 0.054 0.946 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 -10.851 -0.522 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 N -0.265 5.265 4 C -0.062 4.062 5 C -0.146 4.146 6 C -0.062 4.062 7 N -0.238 5.238 8 C 0.027 3.973 9 C -0.590 4.590 10 H 0.090 0.910 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.706 3.294 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.187 1.187 17 C -0.062 4.062 18 C -0.055 4.055 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.469 -10.648 -1.216 14.982 hybrid contribution 1.181 0.496 0.526 1.385 sum -9.288 -10.152 -0.690 13.777 Atomic orbital electron populations 1.21828 0.95335 1.00760 1.02546 1.22012 0.95709 0.89637 0.99918 1.60418 1.16991 1.14003 1.35050 1.21794 0.98940 0.95407 0.90053 1.20627 0.98624 0.94294 1.01053 1.20834 0.94722 0.97779 0.92912 1.61803 1.24071 1.08782 1.29174 1.20328 0.92332 0.89236 0.95358 1.21787 1.16707 1.18064 1.02431 0.90996 1.24993 0.94784 0.96481 0.96886 1.69930 1.20567 1.28293 1.35091 0.86785 0.77387 0.80222 0.84992 1.20209 1.21355 1.18724 1.21665 0.95532 0.90057 0.98921 1.22547 0.85771 0.97006 1.00162 0.92750 0.91832 0.92942 0.91358 0.95873 0.94830 0.91991 0.92688 0.90943 0.92005 0.95174 0.95296 0.95831 0.92724 0.95214 0.90644 0.95864 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.87 37.15 0.37 -1.21 16 2 C 0.06 0.68 5.56 -3.82 -0.02 0.66 16 3 N -0.54 -8.29 4.15 -234.26 -0.97 -9.26 16 4 C 0.07 1.00 5.12 -4.59 -0.02 0.98 16 5 C -0.11 -1.73 5.66 -29.34 -0.17 -1.89 16 6 C 0.07 1.30 4.40 -6.42 -0.03 1.27 16 7 N -0.52 -11.05 4.62 -240.68 -1.11 -12.16 16 8 C 0.15 3.77 3.92 -4.98 -0.02 3.75 16 9 C -0.55 -15.43 8.33 -34.44 -0.29 -15.72 16 10 H 0.07 2.19 6.78 -52.49 -0.36 1.84 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 13 Si 0.88 21.56 27.47 -169.99 -4.67 16.90 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 17 C 0.07 1.37 4.08 -4.75 -0.02 1.35 16 18 C 0.07 1.20 5.70 -2.62 -0.01 1.18 16 19 H 0.05 0.58 6.37 -51.93 -0.33 0.25 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 23 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 24 H 0.03 0.55 6.96 -51.93 -0.36 0.18 16 25 H 0.06 0.80 5.83 -51.93 -0.30 0.50 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.21 8.12 -51.93 -0.42 0.78 16 28 H 0.06 1.26 7.71 -51.92 -0.40 0.86 16 29 H 0.03 0.65 6.89 -51.93 -0.36 0.29 16 30 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 31 H 0.02 0.58 7.33 -51.93 -0.38 0.20 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.03 0.63 6.20 -51.93 -0.32 0.31 16 34 H 0.08 1.61 7.36 -51.93 -0.38 1.23 16 35 H 0.02 0.35 8.04 -51.93 -0.42 -0.06 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 270.83 15.07 4.08 4.08 Total: -1.00 -29.79 270.83 -8.31 -38.10 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.10 Total: -3.20 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.31 Total: -7.68 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.31 Total: -48.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.79 -8.31 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108294177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.547 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds