Wall clock time and date at job start Sun Mar 29 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46911 * 109.47140 * 2 1 4 4 C 1.44250 * 110.99812 * 66.04706 * 3 2 1 5 5 C 1.54246 * 108.64092 * 219.84891 * 4 3 2 6 6 C 1.46136 * 111.90203 * 281.38083 * 5 4 3 7 7 N 1.48108 * 112.19147 * 60.87002 * 6 5 4 8 8 C 1.46894 * 111.00325 * 156.48879 * 7 6 5 9 9 C 1.50701 * 109.47264 * 66.03971 * 8 7 6 10 10 H 1.08001 * 120.00098 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99843 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99847 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00056 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47177 * 89.99890 * 13 11 9 15 15 H 1.48499 * 109.47006 * 209.99993 * 13 11 9 16 16 H 1.48498 * 109.47222 * 329.99655 * 13 11 9 17 17 C 1.44265 * 109.97523 * 279.71706 * 7 6 5 18 18 C 1.48194 * 110.99671 * 194.28655 * 3 2 1 19 19 H 1.09001 * 109.46889 * 299.99838 * 1 2 3 20 20 H 1.08997 * 109.47402 * 60.00000 * 1 2 3 21 21 H 1.08996 * 109.47378 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47305 * 240.00495 * 2 1 3 23 23 H 1.08997 * 109.47402 * 120.00000 * 2 1 3 24 24 H 1.09001 * 109.60634 * 100.09627 * 4 3 2 25 25 H 1.08998 * 109.61066 * 339.59715 * 4 3 2 26 26 H 1.08999 * 108.99103 * 160.75996 * 5 4 3 27 27 H 1.08996 * 108.99661 * 42.00255 * 5 4 3 28 28 H 1.09011 * 108.93841 * 181.56490 * 6 5 4 29 29 H 1.09000 * 108.94033 * 300.16670 * 6 5 4 30 30 H 1.08994 * 109.47152 * 186.04283 * 8 7 6 31 31 H 1.09004 * 109.47146 * 306.04471 * 8 7 6 32 32 H 0.96995 * 120.00081 * 180.02562 * 12 11 9 33 33 H 1.08993 * 108.86680 * 333.10661 * 17 7 6 34 34 H 1.08994 * 108.78253 * 214.63728 * 17 7 6 35 35 H 1.09003 * 108.82684 * 312.52933 * 18 3 2 36 36 H 1.09002 * 108.82807 * 70.94640 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6765 2.0547 1.2307 5 6 1.2554 3.5021 0.9037 6 6 2.4102 4.3647 0.6635 7 7 3.2233 3.9039 -0.4856 8 6 4.0032 5.0103 -1.0560 9 6 5.0289 5.4715 -0.0529 10 1 5.0952 4.9905 0.9118 11 6 5.8836 6.5069 -0.3672 12 7 6.7791 6.9090 0.5080 13 14 5.7695 7.3384 -2.0360 14 1 4.8187 8.4764 -1.9580 15 1 7.1101 7.8395 -2.4319 16 1 5.2890 6.3602 -3.0446 17 6 4.0845 2.8210 -0.0771 18 6 3.4607 1.4388 -0.3414 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.5412 2.0662 1.8943 25 1 0.8496 1.5331 1.7127 26 1 0.6816 3.9020 1.7397 27 1 0.6259 3.4960 0.0139 28 1 2.0599 5.3778 0.4653 29 1 3.0348 4.3766 1.5567 30 1 4.5069 4.6710 -1.9610 31 1 3.3361 5.8373 -1.2998 32 1 7.3800 7.6376 0.2871 33 1 4.2901 2.9170 0.9889 34 1 5.0241 2.8942 -0.6247 35 1 3.9909 0.6944 0.2527 36 1 3.5814 1.1963 -1.3973 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108294177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:51 Heat of formation + Delta-G solvation = -8.998367 kcal Electronic energy + Delta-G solvation = -14977.639902 eV Core-core repulsion = 12688.936778 eV Total energy + Delta-G solvation = -2288.703124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33208 -37.50066 -34.75113 -33.62363 -32.17918 -29.76745 -27.26722 -26.81406 -23.93838 -22.89869 -21.23789 -20.74191 -18.91871 -17.40891 -16.83655 -16.40053 -15.84520 -15.72363 -15.29041 -14.61486 -14.44831 -14.34447 -13.77401 -13.53213 -13.17844 -13.12947 -12.69325 -12.57439 -12.32278 -12.04848 -11.96650 -11.76996 -11.62998 -11.53405 -11.44801 -11.31863 -10.80767 -9.05263 -8.87782 -8.33546 -6.39167 1.35464 1.36745 1.49382 2.33136 2.97190 3.02249 3.33503 4.05523 4.06837 4.20567 4.23132 4.37075 4.46517 4.51346 4.67658 4.71799 4.75593 4.86076 4.88976 4.98964 5.06180 5.12515 5.13972 5.16878 5.20237 5.27315 5.44306 5.46899 5.58798 6.10108 6.28880 6.40100 6.48962 6.53043 6.68590 7.28916 8.82936 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055839 B = 0.007507 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.321228 B = 3728.864843 C = 3775.821411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 N -0.551 5.551 4 C 0.070 3.930 5 C -0.102 4.102 6 C 0.070 3.930 7 N -0.512 5.512 8 C 0.161 3.839 9 C -0.551 4.551 10 H 0.030 0.970 11 C 0.011 3.989 12 N -0.948 5.948 13 Si 0.951 3.049 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.246 1.246 17 C 0.073 3.927 18 C 0.083 3.917 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.016 0.984 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.002 0.998 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.007 0.993 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.901 -11.900 -1.829 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.276 5.276 4 C -0.059 4.059 5 C -0.140 4.140 6 C -0.058 4.058 7 N -0.234 5.234 8 C 0.033 3.967 9 C -0.590 4.590 10 H 0.048 0.952 11 C -0.187 4.187 12 N -0.588 5.588 13 Si 0.774 3.226 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.169 1.169 17 C -0.057 4.057 18 C -0.045 4.045 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.049 0.951 24 H 0.034 0.966 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.313 -11.727 -2.519 17.189 hybrid contribution 1.762 0.776 1.036 2.186 sum -10.551 -10.951 -1.483 15.279 Atomic orbital electron populations 1.21785 0.93796 1.02100 1.02190 1.22125 0.96880 0.87765 1.00609 1.60434 1.15844 1.16198 1.35173 1.21778 0.99237 0.94996 0.89869 1.20575 0.96829 0.94530 1.02092 1.20894 0.95309 0.98479 0.91071 1.61951 1.23560 1.08003 1.29910 1.20201 0.91663 0.90329 0.94473 1.21959 1.17709 1.17731 1.01615 0.95167 1.25949 0.94237 0.97257 1.01274 1.70079 1.21815 1.29298 1.37615 0.85651 0.77724 0.79405 0.79839 1.19138 1.20911 1.16917 1.21646 0.95172 0.91851 0.97049 1.22352 0.86931 0.94325 1.00894 0.92593 0.92623 0.90809 0.90686 0.95135 0.96579 0.89154 0.90264 0.90775 0.92941 0.97933 0.95154 0.95407 0.92483 0.97490 0.92687 0.94486 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.87 71.98 0.71 -1.82 16 2 C 0.05 1.16 5.56 86.30 0.48 1.64 16 3 N -0.55 -15.74 4.15 -895.08 -3.71 -19.45 16 4 C 0.07 1.97 5.12 87.22 0.45 2.41 16 5 C -0.10 -3.12 5.66 28.91 0.16 -2.96 16 6 C 0.07 2.81 4.40 83.96 0.37 3.18 16 7 N -0.51 -22.01 4.62 -915.36 -4.23 -26.23 16 8 C 0.16 7.87 3.92 85.56 0.34 8.21 16 9 C -0.55 -31.82 8.33 25.60 0.21 -31.61 16 10 H 0.03 1.95 6.78 -2.91 -0.02 1.93 16 11 C 0.01 0.64 5.47 84.66 0.46 1.10 16 12 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 13 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 17 C 0.07 2.97 4.08 87.11 0.36 3.32 16 18 C 0.08 2.62 5.70 86.37 0.49 3.12 16 19 H 0.06 0.98 6.37 -2.39 -0.02 0.97 16 20 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.07 1.53 8.02 -2.39 -0.02 1.52 16 23 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 24 H 0.02 0.51 6.96 -2.39 -0.02 0.49 16 25 H 0.09 2.05 5.83 -2.39 -0.01 2.04 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 28 H 0.05 2.15 7.71 -2.38 -0.02 2.13 16 29 H 0.00 0.11 6.89 -2.39 -0.02 0.09 16 30 H 0.03 1.48 7.17 -2.39 -0.02 1.46 16 31 H 0.03 1.34 7.33 -2.39 -0.02 1.32 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.01 0.31 6.20 -2.39 -0.01 0.29 16 34 H 0.05 2.42 7.36 -2.39 -0.02 2.41 16 35 H 0.04 1.07 8.04 -2.39 -0.02 1.05 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -65.14 270.83 -0.76 -65.90 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.97 Total: 6.23 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.03 Total: -13.41 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -7.64 Total: -104.97 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -65.14 -0.76 -65.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108294177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.905 kcal (2) G-P(sol) polarization free energy of solvation -65.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds