Wall clock time and date at job start Sun Mar 29 2020 21:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.48732 * 2 1 4 4 C 1.53041 * 109.49067 * 239.93093 * 2 1 3 5 5 N 1.46959 * 109.36628 * 181.63110 * 4 2 1 6 6 C 1.46897 * 111.00301 * 183.19156 * 5 4 2 7 7 C 1.50705 * 109.46930 * 295.17549 * 6 5 4 8 8 H 1.08007 * 119.99861 * 5.00763 * 7 6 5 9 9 C 1.37867 * 120.00129 * 185.01018 * 7 6 5 10 10 N 1.31513 * 120.00329 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99929 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47196 * 90.00392 * 11 9 7 13 13 H 1.48504 * 109.47177 * 209.99810 * 11 9 7 14 14 H 1.48496 * 109.47184 * 330.00019 * 11 9 7 15 15 C 1.46954 * 110.88271 * 59.31791 * 5 4 2 16 16 C 1.53054 * 109.36380 * 300.68526 * 15 5 4 17 17 H 1.09004 * 109.48698 * 298.42857 * 16 15 5 18 18 C 1.52998 * 109.50622 * 178.37732 * 16 15 5 19 19 N 1.46957 * 109.48741 * 120.03369 * 2 1 3 20 20 C 1.46892 * 111.00346 * 303.15863 * 19 2 1 21 21 H 1.09001 * 109.47524 * 299.95916 * 1 2 3 22 22 H 1.09004 * 109.47109 * 59.96234 * 1 2 3 23 23 H 1.08997 * 109.46866 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.49082 * 301.59262 * 4 2 1 25 25 H 1.09005 * 109.49285 * 61.66328 * 4 2 1 26 26 H 1.09001 * 109.47304 * 55.17123 * 6 5 4 27 27 H 1.08999 * 109.47268 * 175.17632 * 6 5 4 28 28 H 0.97002 * 120.00225 * 180.02562 * 10 9 7 29 29 H 1.08994 * 109.49032 * 180.71605 * 15 5 4 30 30 H 1.08994 * 109.48622 * 60.64532 * 15 5 4 31 31 H 1.08998 * 109.46896 * 300.05051 * 18 16 15 32 32 H 1.09001 * 109.47503 * 60.05262 * 18 16 15 33 33 H 1.09000 * 109.46824 * 180.02562 * 18 16 15 34 34 H 1.08994 * 109.47442 * 296.19814 * 20 19 2 35 35 H 1.08996 * 109.47423 * 56.20282 * 20 19 2 36 36 H 1.09007 * 109.47270 * 176.19644 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7229 -1.2486 5 7 3.5097 -0.7555 -1.2262 6 6 4.0412 -1.3756 -2.4472 7 6 3.6254 -2.8233 -2.4972 8 1 2.9600 -3.2204 -1.7448 9 6 4.0944 -3.6409 -3.5034 10 7 4.9051 -3.1576 -4.4193 11 14 3.5785 -5.4352 -3.5658 12 1 2.3405 -5.5664 -4.3755 13 1 4.6620 -6.2406 -4.1843 14 1 3.3227 -5.9249 -2.1875 15 6 4.0001 -1.4489 -0.0269 16 6 3.4893 -0.7260 1.2217 17 1 3.8756 0.2932 1.2354 18 6 3.9644 -1.4687 2.4722 19 7 2.0203 -0.6934 1.1994 20 6 1.4888 -0.0732 2.4203 21 1 -0.3634 0.5132 0.8903 22 1 -0.3633 0.5144 -0.8897 23 1 -0.3633 -1.0276 -0.0005 24 1 1.6546 -1.7421 -1.2622 25 1 1.7022 -0.1935 -2.1393 26 1 3.6483 -0.8544 -3.3201 27 1 5.1292 -1.3100 -2.4440 28 1 5.2348 -3.7327 -5.1274 29 1 5.0900 -1.4489 -0.0269 30 1 3.6361 -2.4763 -0.0266 31 1 3.5780 -2.4878 2.4583 32 1 5.0540 -1.4934 2.4882 33 1 3.6000 -0.9536 3.3610 34 1 1.8599 0.9485 2.5000 35 1 0.3998 -0.0619 2.3777 36 1 1.8124 -0.6461 3.2894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123568602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:06 Heat of formation + Delta-G solvation = 6.194172 kcal Electronic energy + Delta-G solvation = -15119.924086 eV Core-core repulsion = 12831.879760 eV Total energy + Delta-G solvation = -2288.044326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12976 -35.26023 -33.16810 -32.34818 -29.23019 -27.34912 -25.98064 -25.61265 -23.28895 -20.83193 -20.51244 -19.04523 -16.37842 -15.61446 -15.25823 -14.75389 -14.57697 -13.88556 -13.45810 -12.98586 -12.63937 -12.59468 -12.11469 -11.84246 -11.76452 -11.41920 -11.33980 -11.19971 -11.01340 -10.77868 -10.44574 -10.37481 -10.12820 -9.91039 -9.77380 -9.41499 -8.40267 -7.95418 -7.12760 -5.99413 -4.08219 3.29834 3.36493 3.40508 4.21153 4.43759 4.99936 5.25948 5.28474 5.32337 5.37997 5.62698 5.69958 5.73424 5.74657 5.84434 5.94581 6.06818 6.09455 6.18518 6.19578 6.33575 6.42902 6.49037 6.69305 6.84164 6.95257 7.26564 7.46100 7.52579 7.55789 7.93579 8.10273 8.32870 8.33948 9.02599 9.58506 11.05579 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035822 B = 0.008902 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.454443 B = 3144.497199 C = 3301.602585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.040 0.960 4 C 0.070 3.930 5 N -0.547 5.547 6 C 0.187 3.813 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.072 3.928 16 C 0.082 3.918 17 H 0.039 0.961 18 C -0.143 4.143 19 N -0.533 5.533 20 C 0.020 3.980 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 5.196 11.128 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.059 4.059 5 N -0.270 5.270 6 C 0.062 3.938 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.057 4.057 16 C -0.027 4.027 17 H 0.057 0.943 18 C -0.201 4.201 19 N -0.259 5.259 20 C -0.129 4.129 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.362 5.155 10.943 13.231 hybrid contribution -0.218 -1.063 -0.191 1.101 sum -5.580 4.092 10.752 12.786 Atomic orbital electron populations 1.21863 0.94886 1.02361 1.01071 1.21735 0.94406 0.95796 0.90703 0.94243 1.21956 0.89743 0.99390 0.94800 1.62656 1.06922 1.53351 1.04100 1.19730 0.95906 0.92093 0.86103 1.21773 1.29203 0.96254 1.11332 0.92310 1.24963 0.94846 0.98490 0.95538 1.69947 1.32746 1.36030 1.14407 0.86646 0.78233 0.85234 0.78237 1.20670 1.21193 1.19897 1.21938 0.98846 0.96665 0.88251 1.21758 0.86708 0.98209 0.96008 0.94274 1.21849 1.00733 1.01101 0.96450 1.62155 1.08619 1.53418 1.01700 1.22454 1.00379 0.96644 0.93396 0.92958 0.92287 0.91909 0.93481 0.91571 0.95523 0.94783 0.92869 0.91512 0.93217 0.91907 0.92279 0.93023 0.96354 0.91483 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.87 37.16 0.33 -1.64 16 2 C 0.08 1.37 2.56 -67.66 -0.17 1.20 16 3 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 4 C 0.07 1.42 4.60 -3.77 -0.02 1.41 16 5 N -0.55 -12.23 4.92 -235.92 -1.16 -13.39 16 6 C 0.19 4.93 5.14 -4.97 -0.03 4.91 16 7 C -0.55 -15.27 7.66 -34.44 -0.26 -15.53 16 8 H 0.06 1.65 5.82 -52.48 -0.31 1.35 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.07 1.48 4.52 -3.77 -0.02 1.46 16 16 C 0.08 1.37 2.56 -67.65 -0.17 1.20 16 17 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 18 C -0.14 -2.00 8.86 37.16 0.33 -1.67 16 19 N -0.53 -8.69 4.60 -226.76 -1.04 -9.74 16 20 C 0.02 0.25 8.77 60.06 0.53 0.78 16 21 H 0.05 0.62 6.28 -51.93 -0.33 0.29 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 1.06 6.78 -51.93 -0.35 0.71 16 25 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 26 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.05 1.14 6.61 -51.93 -0.34 0.79 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.62 6.36 -51.93 -0.33 0.29 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.79 6.04 -51.93 -0.31 0.47 16 36 H 0.07 0.79 6.25 -51.92 -0.32 0.46 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -29.33 274.63 -8.01 -37.34 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.08 Total: -3.12 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.42 Total: -6.17 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -1.47 Total: -48.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.33 -8.01 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123568602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.535 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds