Wall clock time and date at job start Sun Mar 29 2020 21:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40424 * 126.83586 * 2 1 4 4 C 1.30590 * 107.01130 * 179.89264 * 3 2 1 5 5 N 1.33349 * 109.13649 * 0.37521 * 4 3 2 6 6 C 1.31642 * 109.69498 * 359.75796 * 5 4 3 7 7 S 1.76197 * 126.08900 * 179.97438 * 6 5 4 8 8 C 1.81003 * 99.99761 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.46967 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47240 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00122 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00334 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00167 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99874 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47292 * 89.99868 * 14 12 10 16 16 H 1.48499 * 109.47429 * 210.00044 * 14 12 10 17 17 H 1.48502 * 109.47125 * 329.99869 * 14 12 10 18 18 H 1.09001 * 109.47060 * 269.68771 * 1 2 3 19 19 H 1.09004 * 109.47073 * 29.68260 * 1 2 3 20 20 H 1.09000 * 109.47212 * 149.68343 * 1 2 3 21 21 H 1.07993 * 125.43337 * 180.11597 * 4 3 2 22 22 H 1.08996 * 109.46996 * 299.99133 * 8 7 6 23 23 H 1.08995 * 109.47483 * 59.99795 * 8 7 6 24 24 H 1.09004 * 109.47133 * 299.99881 * 9 8 7 25 25 H 1.09008 * 109.46907 * 59.99464 * 9 8 7 26 26 H 0.96999 * 119.99793 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3069 1.1239 0.0000 4 6 3.5354 0.6810 0.0023 5 7 3.5194 -0.6524 -0.0044 6 6 2.2748 -1.0811 -0.0060 7 16 1.7573 -2.7653 -0.0149 8 6 3.3689 -3.5893 -0.0197 9 6 3.1663 -5.1059 -0.0272 10 6 4.5080 -5.7919 -0.0318 11 1 5.4147 -5.2050 -0.0301 12 6 4.5783 -7.1689 -0.0383 13 7 5.7493 -7.7675 -0.0428 14 14 3.0103 -8.1840 -0.0420 15 1 2.5938 -8.4465 -1.4431 16 1 3.2541 -9.4741 0.6518 17 1 1.9362 -7.4385 0.6622 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3633 0.8929 -0.5089 20 1 -0.3634 -0.8871 -0.5187 21 1 4.4228 1.2964 0.0048 22 1 3.9260 -3.2925 -0.9083 23 1 3.9265 -3.3020 0.8716 24 1 2.6092 -5.4024 0.8616 25 1 2.6084 -5.3935 -0.9184 26 1 5.7987 -8.7363 -0.0470 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127683371.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:37 Heat of formation + Delta-G solvation = 60.641005 kcal Electronic energy + Delta-G solvation = -11493.335085 eV Core-core repulsion = 9313.312522 eV Total energy + Delta-G solvation = -2180.022563 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.94777 -35.80880 -35.05138 -33.31994 -32.36834 -28.30885 -27.60654 -23.86795 -23.15103 -22.32344 -19.14808 -18.73118 -17.15591 -17.00636 -16.40446 -15.69542 -15.56097 -15.26746 -14.76394 -14.16186 -14.01409 -13.70464 -13.10310 -12.95542 -12.24119 -12.14273 -11.94858 -11.69368 -11.38305 -11.28687 -11.16363 -10.80597 -10.77233 -8.86849 -8.29049 -6.35983 -0.02760 0.35430 1.03084 1.40602 1.42271 1.53591 1.54471 1.78423 2.37632 3.05868 3.48664 3.66195 4.18838 4.23603 4.31101 4.36036 4.57428 4.73987 5.12847 5.20148 5.28585 5.37748 5.48108 5.55379 6.23187 6.70821 6.87683 7.28080 8.87331 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060891 B = 0.006759 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.725943 B = 4141.692161 C = 4575.668936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.367 5.367 3 N -0.336 5.336 4 C 0.202 3.798 5 N -0.575 5.575 6 C 0.241 3.759 7 S 0.021 5.979 8 C -0.067 4.067 9 C 0.005 3.995 10 C -0.532 4.532 11 H 0.035 0.965 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.949 3.051 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.240 1.240 18 H 0.099 0.901 19 H 0.111 0.889 20 H 0.107 0.893 21 H 0.250 0.750 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 13.272 0.051 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.160 5.160 3 N -0.166 5.166 4 C -0.102 4.102 5 N -0.308 5.308 6 C -0.142 4.142 7 S 0.250 5.750 8 C -0.216 4.216 9 C -0.035 4.035 10 C -0.571 4.571 11 H 0.053 0.947 12 C -0.189 4.189 13 N -0.588 5.588 14 Si 0.772 3.228 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.163 1.163 18 H 0.117 0.883 19 H 0.130 0.870 20 H 0.126 0.874 21 H 0.266 0.734 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.664 13.258 0.048 19.769 hybrid contribution 1.287 -0.142 -0.012 1.295 sum -13.377 13.116 0.037 18.734 Atomic orbital electron populations 1.22405 0.70895 1.06577 1.05707 1.50497 1.09136 1.01759 1.54610 1.77821 1.02455 1.08417 1.27894 1.26624 0.96728 0.89992 0.96888 1.71085 1.19237 1.12821 1.27654 1.26573 0.89513 0.97417 1.00734 1.85185 1.12893 0.85453 1.91485 1.23410 0.93963 0.98595 1.05653 1.19305 0.96539 0.89355 0.98261 1.21212 0.92373 0.92050 1.51504 0.94704 1.25984 0.99988 0.99177 0.93740 1.70057 1.26584 1.10237 1.51904 0.85671 0.79749 0.77898 0.79505 1.18852 1.20974 1.16299 0.88253 0.87002 0.87447 0.73429 0.90205 0.90204 0.94523 0.94672 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 11.34 127.77 1.45 2.79 15 2 N -0.37 -9.86 4.06 -369.53 -1.50 -11.36 15 3 N -0.34 -9.60 12.68 -61.25 -0.78 -10.38 15 4 C 0.20 5.72 13.02 180.77 2.35 8.07 15 5 N -0.58 -19.83 10.57 -200.41 -2.12 -21.95 15 6 C 0.24 7.64 8.01 179.92 1.44 9.08 15 7 S 0.02 0.65 21.67 -56.49 -1.22 -0.57 15 8 C -0.07 -2.65 5.15 71.98 0.37 -2.28 15 9 C 0.00 0.22 4.04 29.85 0.12 0.34 15 10 C -0.53 -30.05 9.66 25.60 0.25 -29.80 15 11 H 0.03 2.19 7.99 -2.91 -0.02 2.17 15 12 C 0.01 0.50 5.47 84.65 0.46 0.96 15 13 N -0.95 -58.62 13.96 21.45 0.30 -58.32 15 14 Si 0.95 42.33 27.47 68.60 1.88 44.21 15 15 H -0.26 -11.24 7.11 99.48 0.71 -10.54 15 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 17 H -0.24 -9.69 6.54 99.48 0.65 -9.04 15 18 H 0.10 1.26 8.14 -2.39 -0.02 1.24 15 19 H 0.11 1.37 8.14 -2.38 -0.02 1.36 15 20 H 0.11 1.43 7.76 -2.39 -0.02 1.41 15 21 H 0.25 4.81 8.06 -2.91 -0.02 4.79 15 22 H 0.08 3.31 8.14 -2.40 -0.02 3.29 15 23 H 0.08 3.31 8.14 -2.40 -0.02 3.29 15 24 H 0.04 1.58 7.20 -2.38 -0.02 1.56 15 25 H 0.03 1.49 7.57 -2.38 -0.02 1.48 15 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -69.48 247.31 4.13 -65.35 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.12 Total: 3.84 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 6.45 Total: -10.83 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.10 Total: -102.01 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -1.22 Total: -0.57 kcal Total: -69.48 4.13 -65.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127683371.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.994 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds