Wall clock time and date at job start Sun Mar 29 2020 21:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99688 * 2 1 4 4 H 1.48504 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47293 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47356 * 60.00050 * 3 2 1 7 7 C 1.38809 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99853 * 197.34488 * 7 2 1 9 9 N 1.36938 * 120.00049 * 17.33620 * 7 2 1 10 10 C 1.46927 * 120.63974 * 207.56777 * 9 7 2 11 11 C 1.53162 * 108.81102 * 233.81943 * 10 9 7 12 12 C 1.53065 * 109.33608 * 305.18127 * 11 10 9 13 13 C 1.52964 * 109.51607 * 61.09645 * 12 11 10 14 14 C 1.46943 * 120.64168 * 27.59788 * 9 7 2 15 15 O 1.43657 * 109.51368 * 178.97680 * 13 12 11 16 16 C 1.44809 * 104.78460 * 215.75644 * 15 13 12 17 17 C 1.54922 * 101.72853 * 36.04099 * 16 15 13 18 18 O 1.43287 * 109.69778 * 59.51658 * 13 12 11 19 19 H 0.97005 * 120.00344 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.58131 * 353.62103 * 10 9 7 21 21 H 1.09004 * 109.57267 * 113.88857 * 10 9 7 22 22 H 1.09004 * 109.48164 * 185.23311 * 11 10 9 23 23 H 1.08990 * 109.49966 * 65.14401 * 11 10 9 24 24 H 1.09003 * 109.46311 * 301.09286 * 12 11 10 25 25 H 1.08993 * 109.46473 * 181.11366 * 12 11 10 26 26 H 1.09001 * 109.59396 * 6.81512 * 14 9 7 27 27 H 1.09000 * 109.71507 * 246.44419 * 14 9 7 28 28 H 1.08998 * 110.97716 * 277.92808 * 16 15 13 29 29 H 1.09002 * 111.00798 * 154.15795 * 16 15 13 30 30 H 1.09006 * 110.68983 * 206.09624 * 17 16 15 31 31 H 1.09002 * 110.69411 * 82.89618 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2783 9 7 1.3722 -2.3609 -0.3544 10 6 1.8208 -3.6551 0.1772 11 6 2.0794 -4.6074 -0.9942 12 6 0.8237 -4.6917 -1.8655 13 6 0.4962 -3.3065 -2.4254 14 6 0.2261 -2.3342 -1.2737 15 8 -0.6684 -3.3902 -3.2623 16 6 -0.4231 -2.4458 -4.3324 17 6 1.1039 -2.5994 -4.5441 18 8 1.5972 -2.8294 -3.2086 19 1 -0.4851 0.8401 0.0004 20 1 2.7403 -3.5175 0.7459 21 1 1.0492 -4.0710 0.8252 22 1 2.3230 -5.5981 -0.6104 23 1 2.9114 -4.2330 -1.5905 24 1 -0.0127 -5.0472 -1.2637 25 1 0.9988 -5.3842 -2.6888 26 1 0.0977 -1.3264 -1.6686 27 1 -0.6772 -2.6370 -0.7441 28 1 -0.6741 -1.4314 -4.0226 29 1 -0.9716 -2.7239 -5.2323 30 1 1.5289 -1.6857 -4.9597 31 1 1.3197 -3.4529 -5.1868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134030503.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:12 Heat of formation + Delta-G solvation = -65.504433 kcal Electronic energy + Delta-G solvation = -15466.269441 eV Core-core repulsion = 12941.564273 eV Total energy + Delta-G solvation = -2524.705168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00792 -36.37258 -34.30588 -32.92158 -30.32256 -29.69756 -27.35810 -25.30171 -22.90976 -22.04230 -21.51319 -19.04622 -17.13207 -16.12797 -15.96605 -15.09010 -14.63602 -14.04019 -13.85725 -13.24466 -13.11041 -12.92492 -12.30708 -12.14985 -11.98552 -11.52142 -11.06126 -11.02450 -10.74549 -10.59135 -10.29631 -10.09632 -9.85741 -9.75720 -9.56463 -8.76242 -8.45327 -6.62334 -5.74807 -3.16431 3.39623 3.47296 3.50734 3.97536 4.51575 4.61475 5.02949 5.27776 5.39197 5.44426 5.55359 5.65816 5.71174 5.74147 5.90988 5.97530 6.19038 6.31990 6.37018 6.50616 6.55692 6.76792 6.83853 7.02959 7.19726 7.55972 7.82487 7.86994 8.47940 9.22885 9.87123 10.43202 11.33700 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.013242 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.130086 B = 2113.954839 C = 2540.232625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.067 0.933 9 N -0.582 5.582 10 C 0.143 3.857 11 C -0.129 4.129 12 C -0.111 4.111 13 C 0.229 3.771 14 C 0.162 3.838 15 O -0.382 6.382 16 C 0.018 3.982 17 C 0.018 3.982 18 O -0.357 6.357 19 H 0.253 0.747 20 H 0.056 0.944 21 H 0.019 0.981 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 -6.126 -7.296 9.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.085 0.915 9 N -0.305 5.305 10 C 0.016 3.984 11 C -0.168 4.168 12 C -0.149 4.149 13 C 0.151 3.849 14 C 0.035 3.965 15 O -0.302 6.302 16 C -0.058 4.058 17 C -0.059 4.059 18 O -0.278 6.278 19 H 0.063 0.937 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.613 -6.090 -7.154 9.415 hybrid contribution 0.276 0.971 -0.268 1.044 sum 0.888 -5.119 -7.423 9.060 Atomic orbital electron populations 1.70039 1.05254 1.25329 1.54442 1.25011 0.95279 0.98396 1.01108 0.86222 0.79467 0.83945 0.77169 1.20209 1.21651 1.21782 1.19207 0.92729 0.84775 1.40442 0.91550 1.43833 1.35516 1.01760 1.49388 1.20971 0.97724 0.86729 0.92943 1.21961 0.97218 0.99139 0.98504 1.21682 0.99168 0.94881 0.99164 1.24579 0.74813 0.95739 0.89748 1.21242 0.89553 0.98416 0.87321 1.89148 1.41110 1.61168 1.38774 1.24255 0.95564 0.94889 0.91126 1.24058 0.93756 1.01273 0.86782 1.89007 1.33104 1.86599 1.19103 0.93734 0.92503 0.96293 0.92685 0.91450 0.91174 0.92772 0.88763 0.94696 0.90649 0.88495 0.89149 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.80 11.18 55.49 0.62 -26.18 16 2 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 3 Si 0.90 22.17 29.59 -169.99 -5.03 17.14 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.86 9.59 -15.06 -0.14 -7.01 16 8 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 9 N -0.58 -15.29 2.95 -172.37 -0.51 -15.80 16 10 C 0.14 3.13 6.51 -3.73 -0.02 3.11 16 11 C -0.13 -2.44 5.95 -26.61 -0.16 -2.60 16 12 C -0.11 -2.12 5.31 -26.72 -0.14 -2.27 16 13 C 0.23 4.93 1.05 -26.69 -0.03 4.90 16 14 C 0.16 4.12 4.59 -3.74 -0.02 4.10 16 15 O -0.38 -7.63 10.99 -59.04 -0.65 -8.28 16 16 C 0.02 0.30 7.91 38.17 0.30 0.60 16 17 C 0.02 0.30 8.08 38.17 0.31 0.61 16 18 O -0.36 -7.67 10.13 -59.04 -0.60 -8.27 16 19 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 20 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.07 1.35 7.65 -51.93 -0.40 0.96 16 24 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 2.66 6.04 -51.93 -0.31 2.34 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 251.15 15.07 3.78 3.78 Total: -1.00 -31.44 251.15 -6.85 -38.28 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.48 Total: -2.03 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 0.01 Total: 1.36 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.11 Total: -41.98 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.25 Total: -16.55 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.44 -6.85 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134030503.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.222 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds