Wall clock time and date at job start Sun Mar 29 2020 21:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99688 * 2 1 4 4 H 1.48504 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47293 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47356 * 60.00050 * 3 2 1 7 7 C 1.38809 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99853 * 197.34488 * 7 2 1 9 9 N 1.36938 * 120.00049 * 17.33620 * 7 2 1 10 10 C 1.46927 * 120.63974 * 207.56777 * 9 7 2 11 11 C 1.53162 * 108.81102 * 233.81943 * 10 9 7 12 12 C 1.53065 * 109.33608 * 305.18127 * 11 10 9 13 13 C 1.52964 * 109.51607 * 61.09645 * 12 11 10 14 14 C 1.46943 * 120.64168 * 27.59788 * 9 7 2 15 15 O 1.43657 * 109.51368 * 178.97680 * 13 12 11 16 16 C 1.44809 * 104.78460 * 215.75644 * 15 13 12 17 17 C 1.54922 * 101.72853 * 36.04099 * 16 15 13 18 18 O 1.43287 * 109.69778 * 59.51658 * 13 12 11 19 19 H 0.97005 * 120.00344 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.58131 * 353.62103 * 10 9 7 21 21 H 1.09004 * 109.57267 * 113.88857 * 10 9 7 22 22 H 1.09004 * 109.48164 * 185.23311 * 11 10 9 23 23 H 1.08990 * 109.49966 * 65.14401 * 11 10 9 24 24 H 1.09003 * 109.46311 * 301.09286 * 12 11 10 25 25 H 1.08993 * 109.46473 * 181.11366 * 12 11 10 26 26 H 1.09001 * 109.59396 * 6.81512 * 14 9 7 27 27 H 1.09000 * 109.71507 * 246.44419 * 14 9 7 28 28 H 1.08998 * 110.97716 * 277.92808 * 16 15 13 29 29 H 1.09002 * 111.00798 * 154.15795 * 16 15 13 30 30 H 1.09006 * 110.68983 * 206.09624 * 17 16 15 31 31 H 1.09002 * 110.69411 * 82.89618 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0535 -1.2235 0.2783 9 7 1.3722 -2.3609 -0.3544 10 6 1.8208 -3.6551 0.1772 11 6 2.0794 -4.6074 -0.9942 12 6 0.8237 -4.6917 -1.8655 13 6 0.4962 -3.3065 -2.4254 14 6 0.2261 -2.3342 -1.2737 15 8 -0.6684 -3.3902 -3.2623 16 6 -0.4231 -2.4458 -4.3324 17 6 1.1039 -2.5994 -4.5441 18 8 1.5972 -2.8294 -3.2086 19 1 -0.4851 0.8401 0.0004 20 1 2.7403 -3.5175 0.7459 21 1 1.0492 -4.0710 0.8252 22 1 2.3230 -5.5981 -0.6104 23 1 2.9114 -4.2330 -1.5905 24 1 -0.0127 -5.0472 -1.2637 25 1 0.9988 -5.3842 -2.6888 26 1 0.0977 -1.3264 -1.6686 27 1 -0.6772 -2.6370 -0.7441 28 1 -0.6741 -1.4314 -4.0226 29 1 -0.9716 -2.7239 -5.2323 30 1 1.5289 -1.6857 -4.9597 31 1 1.3197 -3.4529 -5.1868 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134030503.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:12 Heat of formation + Delta-G solvation = -86.954402 kcal Electronic energy + Delta-G solvation = -15467.199581 eV Core-core repulsion = 12941.564273 eV Total energy + Delta-G solvation = -2525.635308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55286 -38.14053 -35.84989 -34.83145 -32.16102 -31.37599 -28.95312 -27.29266 -24.38324 -23.78765 -23.21774 -20.74825 -18.98193 -17.75214 -17.58985 -16.82587 -16.28058 -15.82565 -15.56191 -14.96671 -14.67923 -14.57872 -14.10549 -13.72554 -13.57198 -13.12488 -13.00443 -12.67663 -12.56827 -12.36847 -12.13717 -11.81913 -11.59981 -11.55706 -11.03363 -10.59342 -10.43979 -8.69083 -7.88444 -5.34243 1.44001 1.45449 1.57158 2.46648 2.58075 3.05647 3.27750 3.67765 3.80202 3.97640 4.03042 4.13238 4.23397 4.31783 4.45557 4.59932 4.73130 4.76720 4.88203 4.95427 5.06600 5.07632 5.18433 5.21851 5.47239 5.55482 5.62618 6.26737 6.40705 7.10529 7.81155 8.33477 9.17684 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.013242 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.130086 B = 2113.954839 C = 2540.232625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.134 3.866 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.235 3.765 14 C 0.170 3.830 15 O -0.393 6.393 16 C 0.013 3.987 17 C 0.013 3.987 18 O -0.385 6.385 19 H 0.250 0.750 20 H 0.060 0.940 21 H 0.020 0.980 22 H 0.095 0.905 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.005 0.995 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -7.140 -8.566 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.325 5.325 10 C 0.009 3.991 11 C -0.155 4.155 12 C -0.146 4.146 13 C 0.157 3.843 14 C 0.043 3.957 15 O -0.314 6.314 16 C -0.063 4.063 17 C -0.063 4.063 18 O -0.307 6.307 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.038 0.962 22 H 0.113 0.887 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.123 0.877 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.561 -7.129 -8.435 11.154 hybrid contribution -0.044 1.286 0.104 1.291 sum 1.517 -5.843 -8.331 10.288 Atomic orbital electron populations 1.70196 1.06714 1.25777 1.55726 1.25785 0.96050 1.01535 1.01316 0.85209 0.78673 0.79754 0.76854 1.19083 1.21625 1.21660 1.19517 0.92947 0.86049 1.40056 0.91565 1.44092 1.35474 1.02746 1.50187 1.21188 0.97661 0.85757 0.94473 1.21830 0.96696 1.00097 0.96850 1.21682 0.99242 0.93699 0.99976 1.24151 0.75529 0.95709 0.88889 1.20972 0.88482 0.97667 0.88598 1.89132 1.40823 1.61850 1.39546 1.24523 0.96484 0.93649 0.91600 1.24392 0.93411 1.03407 0.85068 1.88956 1.33336 1.86918 1.21457 0.94109 0.92175 0.96222 0.88650 0.92498 0.90993 0.90136 0.92348 0.97707 0.92390 0.84015 0.87695 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 11.18 21.65 0.24 -57.02 16 2 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 3 Si 0.97 46.17 29.59 68.60 2.03 48.20 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 7 C -0.26 -14.71 9.59 84.03 0.81 -13.91 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.60 -32.04 2.95 -699.24 -2.06 -34.11 16 10 C 0.13 5.83 6.51 86.35 0.56 6.39 16 11 C -0.12 -4.11 5.95 30.67 0.18 -3.92 16 12 C -0.11 -3.90 5.31 30.60 0.16 -3.74 16 13 C 0.24 9.96 1.05 30.62 0.03 9.99 16 14 C 0.17 8.89 4.59 86.34 0.40 9.29 16 15 O -0.39 -15.26 10.99 -126.22 -1.39 -16.64 16 16 C 0.01 0.41 7.91 72.64 0.57 0.98 16 17 C 0.01 0.40 8.08 72.64 0.59 0.98 16 18 O -0.39 -16.05 10.13 -126.22 -1.28 -17.33 16 19 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 20 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 21 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 22 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 23 H 0.06 2.15 7.65 -2.39 -0.02 2.14 16 24 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 26 H 0.06 3.43 6.04 -2.39 -0.01 3.42 16 27 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 29 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.86 251.15 2.36 -66.50 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.10 Total: 6.94 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 3.72 Total: 3.47 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -1.82 Total: -91.13 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -2.67 Total: -33.97 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -68.86 2.36 -66.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134030503.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.458 kcal (2) G-P(sol) polarization free energy of solvation -68.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds