Wall clock time and date at job start Sun Mar 29 2020 21:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45545 * 2 1 4 4 C 1.53038 * 109.46356 * 240.08852 * 2 1 3 5 5 C 1.53123 * 109.27557 * 180.87038 * 4 2 1 6 6 H 1.08995 * 109.52318 * 297.62285 * 5 4 2 7 7 N 1.46906 * 109.52181 * 177.49467 * 5 4 2 8 8 C 1.46903 * 110.99770 * 155.12852 * 7 5 4 9 9 C 1.50697 * 109.46926 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99879 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00034 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00078 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47383 * 89.99459 * 13 11 9 15 15 H 1.48499 * 109.47193 * 209.99732 * 13 11 9 16 16 H 1.48500 * 109.46673 * 329.99584 * 13 11 9 17 17 C 1.53120 * 109.21163 * 57.55810 * 5 4 2 18 18 C 1.53030 * 109.28064 * 302.37543 * 17 5 4 19 19 N 1.46852 * 109.52118 * 59.18329 * 18 17 5 20 20 C 1.46902 * 111.00032 * 174.16149 * 19 18 17 21 21 H 1.08998 * 109.46879 * 300.03229 * 1 2 3 22 22 H 1.08997 * 109.46959 * 60.02795 * 1 2 3 23 23 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.56223 * 60.89548 * 4 2 1 25 25 H 1.09001 * 109.45293 * 300.77409 * 4 2 1 26 26 H 1.00899 * 110.99829 * 279.08001 * 7 5 4 27 27 H 1.09005 * 109.46479 * 299.99747 * 8 7 5 28 28 H 1.08996 * 109.47267 * 59.99984 * 8 7 5 29 29 H 0.97000 * 120.00067 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.50266 * 62.31868 * 17 5 4 31 31 H 1.09000 * 109.50126 * 182.39683 * 17 5 4 32 32 H 1.08996 * 109.46901 * 179.19456 * 18 17 5 33 33 H 1.09004 * 109.46612 * 299.16740 * 18 17 5 34 34 H 1.08996 * 109.47010 * 56.04768 * 20 19 18 35 35 H 1.08998 * 109.46920 * 176.04087 * 20 19 18 36 36 H 1.08992 * 109.46907 * 296.04337 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7195 -1.2507 5 6 3.5710 -0.7361 -1.2355 6 1 3.9467 0.2866 -1.2676 7 7 4.0656 -1.4778 -2.4031 8 6 5.4226 -1.0466 -2.7644 9 6 5.8950 -1.8272 -3.9639 10 1 5.2516 -2.5696 -4.4126 11 6 7.1488 -1.5943 -4.4877 12 7 7.9325 -0.6906 -3.9410 13 14 7.7347 -2.5623 -5.9741 14 1 7.3542 -1.8417 -7.2156 15 1 9.2115 -2.7081 -5.9192 16 1 7.1040 -3.9067 -5.9691 17 6 4.0548 -1.4188 0.0469 18 6 3.4865 -0.6777 1.2592 19 7 2.0193 -0.6917 1.1995 20 6 1.4373 -0.1105 2.4166 21 1 -0.3633 0.5143 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6905 -0.1963 -2.1408 25 1 1.6651 -1.7430 -1.2589 26 1 4.0339 -2.4729 -2.2394 27 1 5.4143 0.0168 -3.0037 28 1 6.0959 -1.2252 -1.9261 29 1 8.8145 -0.5265 -4.3098 30 1 3.7124 -2.4536 0.0596 31 1 5.1439 -1.3953 0.0830 32 1 3.8174 -1.1698 2.1737 33 1 3.8404 0.3533 1.2533 34 1 1.8277 0.8969 2.5607 35 1 0.3527 -0.0688 2.3166 36 1 1.6995 -0.7282 3.2754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155824217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:17 Heat of formation + Delta-G solvation = -7.348332 kcal Electronic energy + Delta-G solvation = -14526.299292 eV Core-core repulsion = 12237.667719 eV Total energy + Delta-G solvation = -2288.631573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21450 -35.57460 -32.81749 -32.24807 -30.72178 -27.31990 -26.39755 -25.01038 -22.45708 -21.80031 -20.43459 -19.49558 -16.43938 -15.60279 -15.33176 -14.82465 -14.45936 -14.18076 -13.82900 -13.68558 -12.63187 -12.42128 -12.30764 -12.01329 -11.92192 -11.67407 -11.60998 -11.22998 -10.94298 -10.77560 -10.74158 -10.46286 -10.21328 -10.16380 -9.69176 -9.12226 -8.45950 -8.23422 -7.20475 -6.01074 -4.02821 3.33869 3.39388 3.43489 3.98368 4.44787 4.89985 5.02048 5.07953 5.25181 5.34447 5.35346 5.45904 5.55653 5.58732 5.68656 5.74617 5.80103 5.90955 5.95222 6.03868 6.17039 6.22186 6.31434 6.39897 6.62872 6.74063 7.18176 7.22438 7.31066 7.47790 7.82075 8.16407 8.45365 8.66734 9.07037 9.62138 11.10038 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064778 B = 0.005928 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.145097 B = 4722.402078 C = 4952.254319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 H 0.037 0.963 4 C -0.096 4.096 5 C 0.086 3.914 6 H 0.065 0.935 7 N -0.685 5.685 8 C 0.194 3.806 9 C -0.513 4.513 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.145 4.145 18 C 0.062 3.938 19 N -0.538 5.538 20 C 0.019 3.981 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.329 0.671 27 H 0.025 0.975 28 H -0.013 1.013 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 1.231 10.584 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.135 4.135 5 C -0.025 4.025 6 H 0.083 0.917 7 N -0.313 5.313 8 C 0.068 3.932 9 C -0.552 4.552 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.184 4.184 18 C -0.067 4.067 19 N -0.264 5.264 20 C -0.129 4.129 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.043 0.957 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.027 1.246 10.046 15.721 hybrid contribution 1.339 0.058 0.055 1.342 sum -10.688 1.305 10.101 14.764 Atomic orbital electron populations 1.21925 0.94656 1.02447 1.01344 1.21665 0.94984 0.95508 0.90728 0.94520 1.21607 0.95591 1.00991 0.95288 1.21560 0.94183 0.98031 0.88738 0.91695 1.60736 1.28266 1.08439 1.33898 1.19565 0.82298 0.96534 0.94833 1.21212 0.99721 1.21119 1.13144 0.91984 1.24989 0.96642 0.95514 0.97447 1.69964 1.09442 1.33358 1.41110 0.86486 0.77602 0.80351 0.82887 1.20633 1.21333 1.19835 1.22350 1.00488 1.00340 0.95248 1.22030 0.86773 0.98834 0.99040 1.61974 1.07471 1.54934 1.01981 1.22443 1.00448 0.97239 0.92752 0.92810 0.92135 0.91807 0.91160 0.91430 0.85368 0.95671 0.99564 0.92963 0.91341 0.91381 0.91266 0.95147 0.96066 0.90985 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.79 37.16 0.33 -1.27 16 2 C 0.08 1.07 2.44 -67.72 -0.17 0.90 16 3 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.10 -1.50 4.99 -26.65 -0.13 -1.63 16 5 C 0.09 1.57 2.53 -67.58 -0.17 1.40 16 6 H 0.06 1.28 7.80 -51.93 -0.41 0.88 16 7 N -0.68 -14.99 6.24 -107.86 -0.67 -15.66 16 8 C 0.19 5.17 5.24 -4.98 -0.03 5.15 16 9 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 10 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.14 -2.38 5.35 -26.65 -0.14 -2.52 16 18 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 19 N -0.54 -7.17 4.75 -234.92 -1.12 -8.28 16 20 C 0.02 0.21 9.30 60.07 0.56 0.77 16 21 H 0.05 0.51 6.15 -51.93 -0.32 0.19 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.33 6.97 8.44 -39.29 -0.33 6.64 16 27 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 28 H -0.01 -0.38 7.50 -51.93 -0.39 -0.77 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 32 H 0.07 0.89 8.12 -51.93 -0.42 0.46 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.68 5.75 -51.93 -0.30 0.38 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 282.71 15.07 4.26 4.26 Total: -1.00 -29.88 282.71 -8.33 -38.20 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.32 Total: 0.96 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.19 Total: -9.95 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -1.05 Total: -50.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.88 -8.33 -38.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.855 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds