Wall clock time and date at job start Sun Mar 29 2020 21:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45545 * 2 1 4 4 C 1.53038 * 109.46356 * 240.08852 * 2 1 3 5 5 C 1.53123 * 109.27557 * 180.87038 * 4 2 1 6 6 H 1.08995 * 109.52318 * 297.62285 * 5 4 2 7 7 N 1.46906 * 109.52181 * 177.49467 * 5 4 2 8 8 C 1.46903 * 110.99770 * 155.12852 * 7 5 4 9 9 C 1.50697 * 109.46926 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99879 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00034 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00078 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47383 * 89.99459 * 13 11 9 15 15 H 1.48499 * 109.47193 * 209.99732 * 13 11 9 16 16 H 1.48500 * 109.46673 * 329.99584 * 13 11 9 17 17 C 1.53120 * 109.21163 * 57.55810 * 5 4 2 18 18 C 1.53030 * 109.28064 * 302.37543 * 17 5 4 19 19 N 1.46852 * 109.52118 * 59.18329 * 18 17 5 20 20 C 1.46902 * 111.00032 * 174.16149 * 19 18 17 21 21 H 1.08998 * 109.46879 * 300.03229 * 1 2 3 22 22 H 1.08997 * 109.46959 * 60.02795 * 1 2 3 23 23 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.56223 * 60.89548 * 4 2 1 25 25 H 1.09001 * 109.45293 * 300.77409 * 4 2 1 26 26 H 1.00899 * 110.99829 * 279.08001 * 7 5 4 27 27 H 1.09005 * 109.46479 * 299.99747 * 8 7 5 28 28 H 1.08996 * 109.47267 * 59.99984 * 8 7 5 29 29 H 0.97000 * 120.00067 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.50266 * 62.31868 * 17 5 4 31 31 H 1.09000 * 109.50126 * 182.39683 * 17 5 4 32 32 H 1.08996 * 109.46901 * 179.19456 * 18 17 5 33 33 H 1.09004 * 109.46612 * 299.16740 * 18 17 5 34 34 H 1.08996 * 109.47010 * 56.04768 * 20 19 18 35 35 H 1.08998 * 109.46920 * 176.04087 * 20 19 18 36 36 H 1.08992 * 109.46907 * 296.04337 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7195 -1.2507 5 6 3.5710 -0.7361 -1.2355 6 1 3.9467 0.2866 -1.2676 7 7 4.0656 -1.4778 -2.4031 8 6 5.4226 -1.0466 -2.7644 9 6 5.8950 -1.8272 -3.9639 10 1 5.2516 -2.5696 -4.4126 11 6 7.1488 -1.5943 -4.4877 12 7 7.9325 -0.6906 -3.9410 13 14 7.7347 -2.5623 -5.9741 14 1 7.3542 -1.8417 -7.2156 15 1 9.2115 -2.7081 -5.9192 16 1 7.1040 -3.9067 -5.9691 17 6 4.0548 -1.4188 0.0469 18 6 3.4865 -0.6777 1.2592 19 7 2.0193 -0.6917 1.1995 20 6 1.4373 -0.1105 2.4166 21 1 -0.3633 0.5143 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6905 -0.1963 -2.1408 25 1 1.6651 -1.7430 -1.2589 26 1 4.0339 -2.4729 -2.2394 27 1 5.4143 0.0168 -3.0037 28 1 6.0959 -1.2252 -1.9261 29 1 8.8145 -0.5265 -4.3098 30 1 3.7124 -2.4536 0.0596 31 1 5.1439 -1.3953 0.0830 32 1 3.8174 -1.1698 2.1737 33 1 3.8404 0.3533 1.2533 34 1 1.8277 0.8969 2.5607 35 1 0.3527 -0.0688 2.3166 36 1 1.6995 -0.7282 3.2754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155824217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:16 Heat of formation + Delta-G solvation = -28.740376 kcal Electronic energy + Delta-G solvation = -14527.226921 eV Core-core repulsion = 12237.667719 eV Total energy + Delta-G solvation = -2289.559202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43381 -37.18308 -34.85721 -33.34015 -32.38054 -28.85999 -27.74750 -26.40555 -23.88917 -23.56427 -21.87152 -20.72902 -18.56714 -16.88032 -16.67130 -16.47376 -15.84850 -15.57013 -15.32538 -15.04874 -14.31595 -14.01313 -13.63393 -13.53236 -13.04804 -12.94370 -12.77795 -12.73352 -12.60809 -12.51503 -12.15137 -11.99985 -11.75373 -11.53736 -11.48657 -11.01565 -10.66631 -9.28686 -9.05420 -8.23289 -6.34939 1.40893 1.43036 1.54386 2.39723 2.94796 3.09856 3.47745 3.82968 3.92045 4.08701 4.12503 4.34844 4.47033 4.51143 4.58411 4.61789 4.69181 4.79523 4.91205 4.93197 4.97633 5.04135 5.09921 5.15687 5.23753 5.26806 5.35180 5.44617 5.62137 6.01815 6.12902 6.19529 6.46264 6.72522 6.89354 7.36370 8.88352 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064778 B = 0.005928 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.145097 B = 4722.402078 C = 4952.254319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.029 0.971 4 C -0.087 4.087 5 C 0.083 3.917 6 H 0.043 0.957 7 N -0.684 5.684 8 C 0.212 3.788 9 C -0.537 4.537 10 H 0.064 0.936 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.975 3.025 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.262 1.262 17 C -0.137 4.137 18 C 0.067 3.933 19 N -0.545 5.545 20 C 0.019 3.981 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.335 0.665 27 H -0.007 1.007 28 H -0.038 1.038 29 H 0.265 0.735 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.023 0.977 35 H 0.088 0.912 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 0.478 10.886 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.047 0.953 4 C -0.125 4.125 5 C -0.027 4.027 6 H 0.061 0.939 7 N -0.313 5.313 8 C 0.084 3.916 9 C -0.575 4.575 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.177 4.177 18 C -0.061 4.061 19 N -0.271 5.271 20 C -0.129 4.129 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.011 0.989 28 H -0.020 1.020 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.374 0.493 10.371 16.931 hybrid contribution 1.731 0.328 0.010 1.762 sum -11.643 0.821 10.381 15.620 Atomic orbital electron populations 1.21877 0.92240 1.02922 1.02652 1.21645 0.96814 0.94567 0.89729 0.95265 1.21511 0.92905 1.01434 0.96698 1.21654 0.96225 0.96436 0.88401 0.93886 1.60645 1.25268 1.09028 1.36319 1.19177 0.84242 0.94480 0.93709 1.21568 1.00374 1.21588 1.13974 0.91730 1.25977 0.96645 0.96429 1.00682 1.70096 1.09926 1.34771 1.42777 0.85301 0.77183 0.79047 0.78567 1.19832 1.20623 1.18643 1.22203 0.99183 1.00696 0.95570 1.21943 0.87696 0.98223 0.98274 1.61982 1.06614 1.55447 1.03010 1.22534 1.01248 0.97411 0.91689 0.90976 0.91453 0.91689 0.91615 0.91243 0.84767 0.98875 1.02010 0.92610 0.90943 0.93596 0.89481 0.95728 0.95841 0.89379 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.79 71.98 0.63 -2.02 16 2 C 0.08 2.04 2.44 44.94 0.11 2.15 16 3 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.09 -2.66 4.99 30.65 0.15 -2.50 16 5 C 0.08 3.12 2.53 45.00 0.11 3.23 16 6 H 0.04 1.78 7.80 -2.39 -0.02 1.76 16 7 N -0.68 -30.74 6.24 -495.15 -3.09 -33.83 16 8 C 0.21 11.76 5.24 85.56 0.45 12.21 16 9 C -0.54 -31.44 9.32 25.60 0.24 -31.20 16 10 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 11 C 0.00 0.04 5.46 84.65 0.46 0.50 16 12 N -0.94 -57.62 13.29 21.44 0.28 -57.33 16 13 Si 0.98 44.94 29.54 68.60 2.03 46.97 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 C -0.14 -4.56 5.35 30.64 0.16 -4.40 16 18 C 0.07 1.83 5.46 86.32 0.47 2.30 16 19 N -0.55 -13.40 4.75 -897.16 -4.26 -17.66 16 20 C 0.02 0.34 9.30 127.69 1.19 1.53 16 21 H 0.07 1.12 6.15 -2.39 -0.01 1.11 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.33 14.39 8.44 -89.69 -0.76 13.63 16 27 H -0.01 -0.42 8.06 -2.38 -0.02 -0.44 16 28 H -0.04 -2.24 7.50 -2.39 -0.02 -2.25 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 31 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 32 H 0.09 2.07 8.12 -2.39 -0.02 2.05 16 33 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 1.35 5.75 -2.39 -0.01 1.34 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -64.51 282.71 -0.78 -65.29 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.27 Total: 14.76 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.98 Total: -18.19 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -7.07 Total: -108.82 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.51 -0.78 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.550 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds