Wall clock time and date at job start Sun Mar 29 2020 21:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46667 * 2 1 4 4 C 1.53041 * 109.45933 * 119.97960 * 2 1 3 5 5 C 1.53120 * 109.27703 * 60.82437 * 4 2 1 6 6 H 1.08993 * 109.52850 * 297.74913 * 5 4 2 7 7 N 1.46906 * 109.52045 * 177.55726 * 5 4 2 8 8 C 1.46904 * 110.99657 * 155.31938 * 7 5 4 9 9 C 1.50701 * 109.46663 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00232 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99548 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00339 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 119.99795 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46893 * 90.00120 * 13 11 9 15 15 H 1.48500 * 109.47118 * 209.99799 * 13 11 9 16 16 H 1.48500 * 109.47096 * 330.00006 * 13 11 9 17 17 C 1.53119 * 109.16202 * 57.65829 * 5 4 2 18 18 C 1.53044 * 109.27589 * 302.34077 * 17 5 4 19 19 N 1.46847 * 109.51335 * 59.18419 * 18 17 5 20 20 C 1.46899 * 110.99862 * 174.15436 * 19 18 17 21 21 H 1.09000 * 109.46887 * 300.02438 * 1 2 3 22 22 H 1.08997 * 109.46810 * 60.02019 * 1 2 3 23 23 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50341 * 300.88421 * 4 2 1 25 25 H 1.09004 * 109.53393 * 180.78155 * 4 2 1 26 26 H 1.00897 * 110.99849 * 31.36913 * 7 5 4 27 27 H 1.09000 * 109.47092 * 300.00006 * 8 7 5 28 28 H 1.08998 * 109.47254 * 60.00097 * 8 7 5 29 29 H 0.97005 * 119.99991 * 179.97438 * 12 11 9 30 30 H 1.09000 * 109.50507 * 182.40742 * 17 5 4 31 31 H 1.08999 * 109.54263 * 62.29675 * 17 5 4 32 32 H 1.09002 * 109.46396 * 179.19729 * 18 17 5 33 33 H 1.08994 * 109.46485 * 299.17654 * 18 17 5 34 34 H 1.09002 * 109.47265 * 56.05132 * 20 19 18 35 35 H 1.09010 * 109.46950 * 176.04938 * 20 19 18 36 36 H 1.08997 * 109.47289 * 296.04662 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5439 -2.1696 1.2355 6 1 0.4545 -2.1821 1.2672 7 7 2.0785 -2.8831 2.4031 8 6 1.2213 -4.0207 2.7626 9 6 1.7999 -4.7261 3.9621 10 1 2.7131 -4.3657 4.4120 11 6 1.1632 -5.8317 4.4850 12 7 0.0514 -6.2709 3.9368 13 14 1.8800 -6.7057 5.9723 14 1 1.3247 -6.1077 7.2131 15 1 1.5274 -8.1472 5.9169 16 1 3.3575 -6.5571 5.9694 17 6 2.0264 -2.8533 -0.0468 18 6 1.5169 -2.0705 -1.2592 19 7 2.0193 -0.6919 -1.1993 20 6 1.6654 0.0506 -2.4164 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6638 -0.2165 2.1399 25 1 3.1298 -0.7096 1.2582 26 1 2.1966 -2.2578 3.1861 27 1 0.2206 -3.6605 3.0011 28 1 1.1674 -4.7145 1.9236 29 1 -0.3963 -7.0489 4.3046 30 1 1.6407 -3.8721 -0.0833 31 1 3.1161 -2.8759 -0.0601 32 1 1.8706 -2.5465 -2.1737 33 1 0.4271 -2.0604 -1.2531 34 1 0.5854 0.0184 -2.5607 35 1 1.9878 1.0871 -2.3163 36 1 2.1604 -0.4025 -3.2753 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155824346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:19 Heat of formation + Delta-G solvation = -4.943588 kcal Electronic energy + Delta-G solvation = -14678.312780 eV Core-core repulsion = 12389.785484 eV Total energy + Delta-G solvation = -2288.527296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50058 -35.46020 -32.81587 -31.73091 -30.72415 -27.68433 -26.25418 -25.01594 -22.76329 -22.04672 -20.75970 -18.35141 -16.52996 -15.70653 -15.21712 -14.82235 -14.62656 -14.18899 -13.88190 -13.08698 -13.01511 -12.58583 -12.41256 -12.10113 -12.06608 -11.69818 -11.29661 -11.17913 -10.97402 -10.85228 -10.73645 -10.50356 -10.12868 -10.00562 -9.58058 -9.09420 -8.45580 -8.17474 -7.22861 -6.00781 -4.02438 3.33419 3.39368 3.44429 4.03540 4.45127 4.91154 4.97653 5.12740 5.24575 5.33966 5.35271 5.41889 5.54078 5.59643 5.64678 5.78228 5.82245 5.84913 5.98667 6.04516 6.20628 6.27522 6.38145 6.42092 6.63268 6.86629 7.21614 7.23583 7.32429 7.46361 7.83062 8.17513 8.46515 8.67351 9.07508 9.62511 11.10370 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065826 B = 0.006091 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.264272 B = 4595.769069 C = 4659.082934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.112 4.112 5 C 0.086 3.914 6 H 0.033 0.967 7 N -0.686 5.686 8 C 0.195 3.805 9 C -0.513 4.513 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.102 4.102 18 C 0.053 3.947 19 N -0.535 5.535 20 C 0.024 3.976 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.328 0.672 27 H -0.017 1.017 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 11.890 -9.655 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.024 4.024 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.024 4.024 6 H 0.050 0.950 7 N -0.316 5.316 8 C 0.068 3.932 9 C -0.552 4.552 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.141 4.141 18 C -0.075 4.075 19 N -0.259 5.259 20 C -0.125 4.125 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.145 0.855 27 H 0.001 0.999 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.955 11.321 -9.977 15.217 hybrid contribution -1.493 -0.100 1.107 1.861 sum 0.462 11.222 -8.871 14.312 Atomic orbital electron populations 1.22530 0.97888 1.02784 1.01680 1.21654 0.92549 0.97574 0.90644 0.90409 1.21781 1.02038 0.95445 0.95719 1.21495 0.96201 0.91794 0.92946 0.94952 1.60675 1.52289 1.11742 1.06919 1.19576 0.89694 0.87800 0.96096 1.21215 1.09319 1.12059 1.12566 0.91973 1.24992 0.94965 0.97172 0.97475 1.69966 1.17696 1.25105 1.41112 0.86492 0.79508 0.78678 0.82697 1.20763 1.21264 1.19746 1.21551 1.02015 0.98291 0.92195 1.22174 0.97420 0.88495 0.99438 1.62166 1.59447 1.02465 1.01854 1.22350 0.98542 0.98651 0.92914 0.92115 0.93026 0.91576 0.92030 0.90510 0.85510 0.99877 0.95430 0.92970 0.91473 0.90801 0.91153 0.94758 0.95724 0.91792 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 8.18 37.16 0.30 -2.06 16 2 C 0.08 1.10 2.93 -67.72 -0.20 0.90 16 3 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 4 C -0.11 -1.67 4.88 -26.65 -0.13 -1.80 16 5 C 0.09 1.57 2.25 -67.59 -0.15 1.42 16 6 H 0.03 0.63 6.22 -51.93 -0.32 0.31 16 7 N -0.69 -15.04 6.30 -107.86 -0.68 -15.72 16 8 C 0.20 5.21 5.24 -4.97 -0.03 5.18 16 9 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 10 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.10 -1.76 5.58 -26.65 -0.15 -1.91 16 18 C 0.05 0.75 5.17 -3.83 -0.02 0.73 16 19 N -0.54 -7.10 4.86 -234.92 -1.14 -8.24 16 20 C 0.02 0.25 9.14 60.06 0.55 0.80 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.57 6.73 -51.93 -0.35 0.22 16 23 H 0.07 0.93 4.80 -51.93 -0.25 0.68 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.33 6.88 8.36 -39.29 -0.33 6.55 16 27 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 28 H 0.03 0.79 7.49 -51.93 -0.39 0.40 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 30 H 0.07 1.26 7.52 -51.93 -0.39 0.87 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.03 0.49 6.19 -51.93 -0.32 0.17 16 34 H 0.02 0.25 6.87 -51.93 -0.36 -0.11 16 35 H 0.06 0.60 8.02 -51.92 -0.42 0.18 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -30.04 276.69 -8.22 -38.26 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.04 Total: 1.44 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.24 Total: -10.34 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -1.08 Total: -50.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.04 -8.22 -38.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.312 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds