Wall clock time and date at job start Sun Mar 29 2020 21:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46667 * 2 1 4 4 C 1.53041 * 109.45933 * 119.97960 * 2 1 3 5 5 C 1.53120 * 109.27703 * 60.82437 * 4 2 1 6 6 H 1.08993 * 109.52850 * 297.74913 * 5 4 2 7 7 N 1.46906 * 109.52045 * 177.55726 * 5 4 2 8 8 C 1.46904 * 110.99657 * 155.31938 * 7 5 4 9 9 C 1.50701 * 109.46663 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00232 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99548 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00339 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 119.99795 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46893 * 90.00120 * 13 11 9 15 15 H 1.48500 * 109.47118 * 209.99799 * 13 11 9 16 16 H 1.48500 * 109.47096 * 330.00006 * 13 11 9 17 17 C 1.53119 * 109.16202 * 57.65829 * 5 4 2 18 18 C 1.53044 * 109.27589 * 302.34077 * 17 5 4 19 19 N 1.46847 * 109.51335 * 59.18419 * 18 17 5 20 20 C 1.46899 * 110.99862 * 174.15436 * 19 18 17 21 21 H 1.09000 * 109.46887 * 300.02438 * 1 2 3 22 22 H 1.08997 * 109.46810 * 60.02019 * 1 2 3 23 23 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.50341 * 300.88421 * 4 2 1 25 25 H 1.09004 * 109.53393 * 180.78155 * 4 2 1 26 26 H 1.00897 * 110.99849 * 31.36913 * 7 5 4 27 27 H 1.09000 * 109.47092 * 300.00006 * 8 7 5 28 28 H 1.08998 * 109.47254 * 60.00097 * 8 7 5 29 29 H 0.97005 * 119.99991 * 179.97438 * 12 11 9 30 30 H 1.09000 * 109.50507 * 182.40742 * 17 5 4 31 31 H 1.08999 * 109.54263 * 62.29675 * 17 5 4 32 32 H 1.09002 * 109.46396 * 179.19729 * 18 17 5 33 33 H 1.08994 * 109.46485 * 299.17654 * 18 17 5 34 34 H 1.09002 * 109.47265 * 56.05132 * 20 19 18 35 35 H 1.09010 * 109.46950 * 176.04938 * 20 19 18 36 36 H 1.08997 * 109.47289 * 296.04662 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5439 -2.1696 1.2355 6 1 0.4545 -2.1821 1.2672 7 7 2.0785 -2.8831 2.4031 8 6 1.2213 -4.0207 2.7626 9 6 1.7999 -4.7261 3.9621 10 1 2.7131 -4.3657 4.4120 11 6 1.1632 -5.8317 4.4850 12 7 0.0514 -6.2709 3.9368 13 14 1.8800 -6.7057 5.9723 14 1 1.3247 -6.1077 7.2131 15 1 1.5274 -8.1472 5.9169 16 1 3.3575 -6.5571 5.9694 17 6 2.0264 -2.8533 -0.0468 18 6 1.5169 -2.0705 -1.2592 19 7 2.0193 -0.6919 -1.1993 20 6 1.6654 0.0506 -2.4164 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6638 -0.2165 2.1399 25 1 3.1298 -0.7096 1.2582 26 1 2.1966 -2.2578 3.1861 27 1 0.2206 -3.6605 3.0011 28 1 1.1674 -4.7145 1.9236 29 1 -0.3963 -7.0489 4.3046 30 1 1.6407 -3.8721 -0.0833 31 1 3.1161 -2.8759 -0.0601 32 1 1.8706 -2.5465 -2.1737 33 1 0.4271 -2.0604 -1.2531 34 1 0.5854 0.0184 -2.5607 35 1 1.9878 1.0871 -2.3163 36 1 2.1604 -0.4025 -3.2753 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155824346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:19 Heat of formation + Delta-G solvation = -26.843914 kcal Electronic energy + Delta-G solvation = -14679.262449 eV Core-core repulsion = 12389.785484 eV Total energy + Delta-G solvation = -2289.476965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69688 -37.10039 -34.82633 -32.91789 -32.32872 -29.14856 -27.77557 -26.32176 -24.14801 -23.73885 -22.33297 -19.61781 -18.56139 -17.03884 -16.72862 -16.28941 -16.24634 -15.56407 -15.17482 -14.66490 -14.32808 -14.05089 -13.91472 -13.65005 -13.30585 -13.01266 -12.78084 -12.73714 -12.59479 -12.28319 -12.19939 -11.99697 -11.78484 -11.55637 -11.22898 -10.96805 -10.66033 -9.19576 -9.11076 -8.23392 -6.34993 1.40565 1.42696 1.54708 2.39685 3.01386 3.09760 3.48727 3.79454 3.90626 4.15138 4.24743 4.30738 4.43400 4.49262 4.51304 4.64649 4.72215 4.79587 4.85649 4.95367 5.02014 5.07629 5.08385 5.14521 5.21465 5.24614 5.29412 5.47526 5.63770 6.03181 6.14768 6.23241 6.47570 6.74026 6.90134 7.36394 8.88360 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065826 B = 0.006091 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.264272 B = 4595.769069 C = 4659.082934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.102 0.898 4 C -0.104 4.104 5 C 0.085 3.915 6 H 0.017 0.983 7 N -0.685 5.685 8 C 0.213 3.787 9 C -0.537 4.537 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.975 3.025 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.264 1.264 17 C -0.098 4.098 18 C 0.062 3.938 19 N -0.545 5.545 20 C 0.024 3.976 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.334 0.666 27 H -0.045 1.045 28 H -0.002 1.002 29 H 0.265 0.735 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 13.190 -9.722 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.120 0.880 4 C -0.142 4.142 5 C -0.025 4.025 6 H 0.035 0.965 7 N -0.316 5.316 8 C 0.085 3.915 9 C -0.575 4.575 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.188 1.188 17 C -0.137 4.137 18 C -0.066 4.066 19 N -0.269 5.269 20 C -0.124 4.124 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.152 0.848 27 H -0.027 1.027 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.763 12.651 -10.061 16.398 hybrid contribution -1.754 -0.476 1.074 2.111 sum 1.009 12.175 -8.987 15.166 Atomic orbital electron populations 1.22478 0.97511 1.01577 1.02864 1.21676 0.92780 0.98239 0.89453 0.87971 1.21719 1.01774 0.93033 0.97671 1.21599 0.95327 0.93947 0.91672 0.96497 1.60583 1.51304 1.11491 1.08196 1.19183 0.88972 0.88784 0.94548 1.21570 1.09662 1.12856 1.13402 0.91718 1.25985 0.95178 0.97854 1.00744 1.70099 1.19034 1.25657 1.42786 0.85300 0.78949 0.77295 0.78544 1.19563 1.20667 1.18844 1.21475 1.01321 0.97464 0.93450 1.22024 0.97188 0.89264 0.98158 1.62153 1.59656 1.02005 1.03115 1.22429 0.99026 0.99218 0.91731 0.91576 0.91239 0.93921 0.91117 0.90765 0.84827 1.02735 0.98396 0.92611 0.94203 0.91565 0.89722 0.94949 0.95255 0.90110 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.28 8.18 71.98 0.59 -3.69 16 2 C 0.09 2.06 2.93 44.94 0.13 2.20 16 3 H 0.10 2.00 8.04 -2.39 -0.02 1.98 16 4 C -0.10 -2.99 4.88 30.65 0.15 -2.84 16 5 C 0.08 3.14 2.25 44.99 0.10 3.24 16 6 H 0.02 0.69 6.22 -2.39 -0.01 0.68 16 7 N -0.69 -30.87 6.30 -495.15 -3.12 -33.99 16 8 C 0.21 11.88 5.24 85.56 0.45 12.33 16 9 C -0.54 -31.51 9.32 25.60 0.24 -31.27 16 10 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 11 C 0.00 0.02 5.46 84.65 0.46 0.49 16 12 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 13 Si 0.98 45.01 29.54 68.60 2.03 47.03 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 C -0.10 -3.49 5.58 30.65 0.17 -3.32 16 18 C 0.06 1.72 5.17 86.33 0.45 2.16 16 19 N -0.55 -13.25 4.86 -897.15 -4.36 -17.61 16 20 C 0.02 0.42 9.14 127.69 1.17 1.59 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 1.35 6.73 -2.39 -0.02 1.33 16 23 H 0.04 1.18 4.80 -2.39 -0.01 1.17 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.33 14.19 8.36 -89.70 -0.75 13.44 16 27 H -0.04 -2.71 8.06 -2.39 -0.02 -2.72 16 28 H 0.00 -0.13 7.49 -2.39 -0.02 -0.14 16 29 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 30 H 0.04 1.59 7.52 -2.39 -0.02 1.57 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 32 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 33 H 0.03 0.91 6.19 -2.39 -0.01 0.90 16 34 H 0.03 0.51 6.87 -2.39 -0.02 0.49 16 35 H 0.08 1.20 8.02 -2.38 -0.02 1.18 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -65.19 276.69 -0.97 -66.15 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.29 Total: 14.97 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.90 Total: -19.11 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -7.19 Total: -109.06 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.19 -0.97 -66.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.310 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds