Wall clock time and date at job start Sun Mar 29 2020 21:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46072 * 2 1 4 4 C 1.53038 * 109.46281 * 119.97476 * 2 1 3 5 5 C 1.53127 * 109.27941 * 179.18690 * 4 2 1 6 6 H 1.08998 * 109.57452 * 62.28001 * 5 4 2 7 7 N 1.46896 * 109.52463 * 182.44160 * 5 4 2 8 8 C 1.46895 * 111.00180 * 204.68095 * 7 5 4 9 9 C 1.50697 * 109.47330 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99707 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00288 * 180.02562 * 9 8 7 12 12 N 1.31523 * 120.00027 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00379 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46765 * 59.99919 * 13 11 9 15 15 H 1.48496 * 109.47247 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46946 * 300.00358 * 13 11 9 17 17 C 1.53117 * 109.15989 * 302.34585 * 5 4 2 18 18 C 1.53044 * 109.27792 * 57.65607 * 17 5 4 19 19 N 1.46830 * 109.46156 * 240.02046 * 2 1 3 20 20 C 1.46901 * 110.98168 * 54.14453 * 19 2 1 21 21 H 1.08996 * 109.47580 * 300.02377 * 1 2 3 22 22 H 1.09001 * 109.46948 * 60.02806 * 1 2 3 23 23 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50308 * 59.24904 * 4 2 1 25 25 H 1.09000 * 109.50697 * 299.12630 * 4 2 1 26 26 H 1.00899 * 110.99951 * 80.72426 * 7 5 4 27 27 H 1.08996 * 109.47357 * 300.00336 * 8 7 5 28 28 H 1.09005 * 109.46957 * 60.00492 * 8 7 5 29 29 H 0.96996 * 120.00030 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.50874 * 297.71787 * 17 5 4 31 31 H 1.09002 * 109.53469 * 177.60908 * 17 5 4 32 32 H 1.09002 * 109.46396 * 60.83566 * 18 17 5 33 33 H 1.08994 * 109.46485 * 180.81491 * 18 17 5 34 34 H 1.09001 * 109.46924 * 180.26109 * 20 19 2 35 35 H 1.09000 * 109.46915 * 300.26098 * 20 19 2 36 36 H 1.08999 * 109.47074 * 60.26281 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7363 1.2355 6 1 3.9467 0.2864 1.2676 7 7 4.0655 -1.4779 2.4031 8 6 5.4237 -1.0490 2.7625 9 6 5.8961 -1.8295 3.9620 10 1 5.2518 -2.5703 4.4120 11 6 7.1506 -1.5978 4.4849 12 7 7.9349 -0.6952 3.9371 13 14 7.7364 -2.5657 5.9713 14 1 7.7452 -4.0147 5.6463 15 1 9.1094 -2.1321 6.3347 16 1 6.8204 -2.3203 7.1141 17 6 4.0546 -1.4191 -0.0468 18 6 3.4863 -0.6779 -1.2592 19 7 2.0191 -0.6918 -1.1992 20 6 1.4369 -0.1104 -2.4161 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6658 -1.7447 1.2576 25 1 1.6896 -0.1982 2.1400 26 1 4.0318 -2.4730 2.2402 27 1 6.0957 -1.2295 1.9235 28 1 5.4177 0.0146 3.0010 29 1 8.8174 -0.5320 4.3052 30 1 3.7121 -2.4538 -0.0597 31 1 5.1437 -1.3956 -0.0838 32 1 3.8403 0.3531 -1.2534 33 1 3.8170 -1.1702 -2.1737 34 1 1.8122 -0.6442 -3.2893 35 1 0.3510 -0.1969 -2.3765 36 1 1.7154 0.9411 -2.4856 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155824571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:23 Heat of formation + Delta-G solvation = -8.325443 kcal Electronic energy + Delta-G solvation = -14526.291513 eV Core-core repulsion = 12237.617569 eV Total energy + Delta-G solvation = -2288.673944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21435 -35.57287 -32.81404 -32.24517 -30.71864 -27.32505 -26.37898 -25.00915 -22.45882 -21.80293 -20.43829 -19.50049 -16.43612 -15.58906 -15.32797 -14.82565 -14.46415 -14.15360 -13.82242 -13.68487 -12.61343 -12.42380 -12.29162 -12.02618 -11.94067 -11.70158 -11.61040 -11.21638 -10.95725 -10.77454 -10.73009 -10.47709 -10.21843 -10.16780 -9.69063 -9.12912 -8.45604 -8.23565 -7.20374 -6.00786 -4.02639 3.35409 3.38927 3.42365 3.98358 4.44878 4.90187 5.02753 5.08574 5.25897 5.33857 5.35208 5.46294 5.55179 5.58374 5.69060 5.74978 5.80319 5.90622 5.94289 6.03809 6.16719 6.22234 6.31559 6.39965 6.62876 6.74095 7.18015 7.22424 7.31129 7.47866 7.81959 8.16638 8.45509 8.66793 9.06925 9.62223 11.10267 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064793 B = 0.005928 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.043486 B = 4722.086445 C = 4952.182423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 H 0.037 0.963 4 C -0.096 4.096 5 C 0.086 3.914 6 H 0.065 0.935 7 N -0.685 5.685 8 C 0.195 3.805 9 C -0.514 4.514 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.145 4.145 18 C 0.061 3.939 19 N -0.538 5.538 20 C 0.022 3.978 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.329 0.671 27 H -0.014 1.014 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 1.236 -10.585 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.135 4.135 5 C -0.025 4.025 6 H 0.083 0.917 7 N -0.313 5.313 8 C 0.068 3.932 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.184 4.184 18 C -0.067 4.067 19 N -0.264 5.264 20 C -0.126 4.126 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.146 0.854 27 H 0.004 0.996 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.984 1.259 -10.046 15.688 hybrid contribution 1.325 0.042 -0.058 1.327 sum -10.659 1.301 -10.104 14.745 Atomic orbital electron populations 1.21904 0.94635 1.02421 1.01347 1.21668 0.95008 0.95476 0.90695 0.94499 1.21610 0.95589 1.00982 0.95305 1.21559 0.94177 0.98035 0.88733 0.91683 1.60728 1.28178 1.08484 1.33950 1.19558 0.82270 0.96540 0.94823 1.21175 0.99670 1.21236 1.13193 0.92039 1.24990 0.96643 0.95492 0.97442 1.69957 1.09397 1.33325 1.41204 0.86544 0.77603 0.80184 0.82960 1.20268 1.21370 1.20160 1.22356 1.00488 1.00338 0.95255 1.22034 0.86790 0.98831 0.99047 1.61969 1.07462 1.54953 1.01993 1.22406 1.00525 0.97017 0.92700 0.92156 0.92888 0.91825 0.91419 0.91171 0.85371 0.99577 0.95670 0.92904 0.91342 0.91384 0.95160 0.91260 0.91796 0.91130 0.96072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.77 37.15 0.33 -1.26 16 2 C 0.08 1.07 2.44 -67.74 -0.17 0.91 16 3 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.10 -1.50 4.98 -26.65 -0.13 -1.63 16 5 C 0.09 1.57 2.53 -67.59 -0.17 1.40 16 6 H 0.06 1.28 7.80 -51.93 -0.41 0.88 16 7 N -0.68 -14.99 6.24 -107.87 -0.67 -15.66 16 8 C 0.19 5.18 5.24 -4.98 -0.03 5.16 16 9 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.14 -2.38 5.35 -26.65 -0.14 -2.53 16 18 C 0.06 0.86 5.47 -3.83 -0.02 0.84 16 19 N -0.54 -7.16 4.75 -234.94 -1.11 -8.28 16 20 C 0.02 0.23 9.06 60.07 0.54 0.78 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.51 6.32 -51.93 -0.33 0.18 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.33 6.97 8.44 -39.29 -0.33 6.64 16 27 H -0.01 -0.38 7.49 -51.93 -0.39 -0.77 16 28 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.07 0.67 6.19 -51.93 -0.32 0.35 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -29.85 282.97 -8.37 -38.21 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.35 Total: 0.94 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.21 Total: -9.94 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -1.05 Total: -50.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.85 -8.37 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.888 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds