Wall clock time and date at job start Sun Mar 29 2020 21:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46072 * 2 1 4 4 C 1.53038 * 109.46281 * 119.97476 * 2 1 3 5 5 C 1.53127 * 109.27941 * 179.18690 * 4 2 1 6 6 H 1.08998 * 109.57452 * 62.28001 * 5 4 2 7 7 N 1.46896 * 109.52463 * 182.44160 * 5 4 2 8 8 C 1.46895 * 111.00180 * 204.68095 * 7 5 4 9 9 C 1.50697 * 109.47330 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99707 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00288 * 180.02562 * 9 8 7 12 12 N 1.31523 * 120.00027 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00379 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46765 * 59.99919 * 13 11 9 15 15 H 1.48496 * 109.47247 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46946 * 300.00358 * 13 11 9 17 17 C 1.53117 * 109.15989 * 302.34585 * 5 4 2 18 18 C 1.53044 * 109.27792 * 57.65607 * 17 5 4 19 19 N 1.46830 * 109.46156 * 240.02046 * 2 1 3 20 20 C 1.46901 * 110.98168 * 54.14453 * 19 2 1 21 21 H 1.08996 * 109.47580 * 300.02377 * 1 2 3 22 22 H 1.09001 * 109.46948 * 60.02806 * 1 2 3 23 23 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50308 * 59.24904 * 4 2 1 25 25 H 1.09000 * 109.50697 * 299.12630 * 4 2 1 26 26 H 1.00899 * 110.99951 * 80.72426 * 7 5 4 27 27 H 1.08996 * 109.47357 * 300.00336 * 8 7 5 28 28 H 1.09005 * 109.46957 * 60.00492 * 8 7 5 29 29 H 0.96996 * 120.00030 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.50874 * 297.71787 * 17 5 4 31 31 H 1.09002 * 109.53469 * 177.60908 * 17 5 4 32 32 H 1.09002 * 109.46396 * 60.83566 * 18 17 5 33 33 H 1.08994 * 109.46485 * 180.81491 * 18 17 5 34 34 H 1.09001 * 109.46924 * 180.26109 * 20 19 2 35 35 H 1.09000 * 109.46915 * 300.26098 * 20 19 2 36 36 H 1.08999 * 109.47074 * 60.26281 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7363 1.2355 6 1 3.9467 0.2864 1.2676 7 7 4.0655 -1.4779 2.4031 8 6 5.4237 -1.0490 2.7625 9 6 5.8961 -1.8295 3.9620 10 1 5.2518 -2.5703 4.4120 11 6 7.1506 -1.5978 4.4849 12 7 7.9349 -0.6952 3.9371 13 14 7.7364 -2.5657 5.9713 14 1 7.7452 -4.0147 5.6463 15 1 9.1094 -2.1321 6.3347 16 1 6.8204 -2.3203 7.1141 17 6 4.0546 -1.4191 -0.0468 18 6 3.4863 -0.6779 -1.2592 19 7 2.0191 -0.6918 -1.1992 20 6 1.4369 -0.1104 -2.4161 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6658 -1.7447 1.2576 25 1 1.6896 -0.1982 2.1400 26 1 4.0318 -2.4730 2.2402 27 1 6.0957 -1.2295 1.9235 28 1 5.4177 0.0146 3.0010 29 1 8.8174 -0.5320 4.3052 30 1 3.7121 -2.4538 -0.0597 31 1 5.1437 -1.3956 -0.0838 32 1 3.8403 0.3531 -1.2534 33 1 3.8170 -1.1702 -2.1737 34 1 1.8122 -0.6442 -3.2893 35 1 0.3510 -0.1969 -2.3765 36 1 1.7154 0.9411 -2.4856 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155824571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:23 Heat of formation + Delta-G solvation = -29.684224 kcal Electronic energy + Delta-G solvation = -14527.217699 eV Core-core repulsion = 12237.617569 eV Total energy + Delta-G solvation = -2289.600130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43379 -37.18137 -34.85341 -33.33772 -32.37682 -28.86308 -27.73540 -26.39853 -23.88797 -23.56751 -21.87633 -20.73507 -18.56349 -16.87430 -16.66850 -16.46734 -15.85138 -15.56870 -15.31652 -15.03837 -14.29140 -14.01551 -13.62658 -13.51372 -13.06982 -12.91824 -12.79709 -12.72903 -12.64574 -12.50331 -12.15643 -12.00190 -11.75340 -11.54733 -11.50110 -11.02302 -10.65933 -9.28748 -9.05291 -8.22985 -6.34759 1.40893 1.44851 1.52895 2.39889 2.94862 3.10003 3.47797 3.83064 3.92105 4.09776 4.12330 4.35393 4.47035 4.50915 4.58354 4.62256 4.68752 4.79748 4.90569 4.94091 4.98123 5.04292 5.09453 5.14760 5.23758 5.26240 5.35279 5.44531 5.62049 6.01920 6.12839 6.19475 6.46434 6.72510 6.89382 7.36472 8.88416 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064793 B = 0.005928 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.043486 B = 4722.086445 C = 4952.182423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.030 0.970 4 C -0.087 4.087 5 C 0.083 3.917 6 H 0.043 0.957 7 N -0.684 5.684 8 C 0.212 3.788 9 C -0.538 4.538 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.137 4.137 18 C 0.067 3.933 19 N -0.545 5.545 20 C 0.021 3.979 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.335 0.665 27 H -0.038 1.038 28 H -0.007 1.007 29 H 0.265 0.735 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.035 0.462 -10.900 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.047 0.953 4 C -0.126 4.126 5 C -0.027 4.027 6 H 0.061 0.939 7 N -0.313 5.313 8 C 0.084 3.916 9 C -0.576 4.576 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.177 4.177 18 C -0.062 4.062 19 N -0.271 5.271 20 C -0.127 4.127 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.152 0.848 27 H -0.020 1.020 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.320 0.483 -10.384 16.896 hybrid contribution 1.712 0.318 -0.010 1.742 sum -11.608 0.801 -10.394 15.601 Atomic orbital electron populations 1.21854 0.92243 1.02892 1.02628 1.21646 0.96817 0.94536 0.89710 0.95252 1.21513 0.92907 1.01427 0.96705 1.21652 0.96214 0.96441 0.88402 0.93876 1.60637 1.25176 1.09080 1.36375 1.19169 0.84225 0.94479 0.93700 1.21541 1.00334 1.21718 1.14020 0.91729 1.25980 0.96643 0.96407 1.00683 1.70094 1.09851 1.34750 1.42860 0.85356 0.77150 0.78890 0.78713 1.19010 1.20729 1.19296 1.22209 0.99182 1.00696 0.95581 1.21949 0.87701 0.98224 0.98286 1.61978 1.06613 1.55459 1.03016 1.22496 1.01365 0.97152 0.91638 0.91485 0.91097 0.91697 0.91225 0.91636 0.84761 1.02020 0.98884 0.92606 0.90945 0.93603 0.95738 0.89441 0.90648 0.89541 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.77 71.98 0.63 -2.03 16 2 C 0.08 2.06 2.44 44.94 0.11 2.17 16 3 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 4 C -0.09 -2.66 4.98 30.65 0.15 -2.51 16 5 C 0.08 3.12 2.53 45.00 0.11 3.23 16 6 H 0.04 1.79 7.80 -2.39 -0.02 1.77 16 7 N -0.68 -30.75 6.24 -495.18 -3.09 -33.84 16 8 C 0.21 11.78 5.24 85.56 0.45 12.23 16 9 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 10 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 11 C 0.00 0.06 5.46 84.65 0.46 0.52 16 12 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 13 Si 0.98 44.92 29.54 68.60 2.03 46.95 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 C -0.14 -4.57 5.35 30.65 0.16 -4.40 16 18 C 0.07 1.82 5.47 86.33 0.47 2.29 16 19 N -0.55 -13.39 4.75 -897.21 -4.26 -17.64 16 20 C 0.02 0.39 9.06 127.69 1.16 1.54 16 21 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.07 1.12 6.32 -2.39 -0.02 1.10 16 23 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.33 14.38 8.44 -89.69 -0.76 13.62 16 27 H -0.04 -2.24 7.49 -2.39 -0.02 -2.26 16 28 H -0.01 -0.43 8.06 -2.38 -0.02 -0.44 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 31 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 34 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.09 1.33 6.19 -2.39 -0.01 1.31 16 36 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -64.45 282.97 -0.82 -65.27 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.27 Total: 14.82 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 3.95 Total: -18.21 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -7.06 Total: -108.82 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.45 -0.82 -65.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155824571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.585 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds