Wall clock time and date at job start Sun Mar 29 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.52072 * 2 1 4 4 C 1.53036 * 109.49874 * 120.08679 * 2 1 3 5 5 C 1.53033 * 109.53792 * 181.31584 * 4 2 1 6 6 C 1.53626 * 109.24399 * 298.51161 * 5 4 2 7 7 N 1.46923 * 108.54012 * 54.85487 * 6 5 4 8 8 C 1.34785 * 120.62871 * 126.37247 * 7 6 5 9 9 O 1.21681 * 119.99643 * 174.85715 * 8 7 6 10 10 C 1.46374 * 120.00017 * 354.85816 * 8 7 6 11 11 H 1.08005 * 119.99904 * 15.42338 * 10 8 7 12 12 C 1.40045 * 120.00108 * 195.43408 * 10 8 7 13 13 N 1.30676 * 119.99851 * 191.70383 * 12 10 8 14 14 Si 1.86803 * 119.99870 * 11.69556 * 12 10 8 15 15 H 1.48493 * 109.47131 * 270.00583 * 14 12 10 16 16 H 1.48501 * 109.47102 * 30.00747 * 14 12 10 17 17 H 1.48503 * 109.46710 * 150.00626 * 14 12 10 18 18 C 1.46920 * 118.74090 * 306.09363 * 7 6 5 19 19 H 1.09007 * 109.47226 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47103 * 300.07535 * 1 2 3 21 21 H 1.09006 * 109.47632 * 60.07700 * 1 2 3 22 22 H 0.96693 * 114.00670 * 299.92013 * 3 2 1 23 23 H 1.09000 * 109.45919 * 301.33809 * 4 2 1 24 24 H 1.09004 * 109.45874 * 61.31037 * 4 2 1 25 25 H 1.09007 * 109.49957 * 58.58727 * 5 4 2 26 26 H 1.08995 * 109.49901 * 178.64576 * 5 4 2 27 27 H 1.08995 * 109.73813 * 295.11872 * 6 5 4 28 28 H 1.09004 * 109.66527 * 174.54697 * 6 5 4 29 29 H 0.96994 * 120.00312 * 354.87598 * 13 12 10 30 30 H 1.09002 * 109.58659 * 173.65488 * 18 7 6 31 31 H 1.09000 * 109.58646 * 294.07359 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0075 1.3468 0.0000 4 6 2.0408 -0.7232 1.2482 5 6 3.5708 -0.6951 1.2658 6 6 4.1050 -1.4318 0.0281 7 7 3.5045 -0.8290 -1.1697 8 6 4.2810 -0.3861 -2.1784 9 8 3.7707 0.0249 -3.2037 10 6 5.7382 -0.3997 -2.0406 11 1 6.2011 -0.9812 -1.2569 12 6 6.5322 0.3415 -2.9246 13 7 7.8254 0.1560 -2.9537 14 14 5.7425 1.5950 -4.0624 15 1 5.3694 0.9375 -5.3405 16 1 4.5255 2.1509 -3.4180 17 1 6.7048 2.6932 -4.3331 18 6 2.0413 -0.7237 -1.2497 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5150 0.8893 21 1 -0.3634 0.5126 -0.8907 22 1 1.7237 1.8648 -0.7656 23 1 1.6582 -0.2247 2.1388 24 1 1.6969 -1.7575 1.2349 25 1 3.9159 0.3388 1.2540 26 1 3.9334 -1.1893 2.1671 27 1 3.8338 -2.4861 0.0816 28 1 5.1896 -1.3331 -0.0178 29 1 8.2445 -0.4396 -2.3131 30 1 1.7637 -0.1578 -2.1390 31 1 1.6052 -1.7215 -1.2982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157427918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:43 Heat of formation + Delta-G solvation = -132.144687 kcal Electronic energy + Delta-G solvation = -15126.334432 eV Core-core repulsion = 12598.739527 eV Total energy + Delta-G solvation = -2527.594906 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91995 -38.87236 -36.29748 -35.10381 -33.30534 -32.29146 -29.06302 -27.30597 -25.87815 -23.23312 -21.74737 -20.79561 -19.29841 -17.72132 -17.57327 -16.48866 -16.07455 -15.86970 -15.57873 -15.10488 -14.78335 -14.50762 -13.96210 -13.83512 -13.58313 -13.06649 -12.94619 -12.74587 -12.53246 -12.18254 -11.98685 -11.88068 -11.32730 -11.30371 -11.13112 -10.90487 -10.07331 -9.24768 -9.16691 -7.07204 1.42958 1.49242 1.89678 2.14689 2.35206 2.66602 3.25334 3.39978 3.71928 3.89095 3.98266 4.14995 4.34907 4.49495 4.58398 4.73936 4.77971 4.82108 4.92150 4.93695 5.08604 5.17764 5.25843 5.45376 5.47414 5.57704 5.87787 6.14943 6.67837 6.80894 7.04424 7.98897 8.12565 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041585 B = 0.011135 C = 0.009818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.157678 B = 2513.878759 C = 2851.184827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 O -0.572 6.572 4 C -0.098 4.098 5 C -0.124 4.124 6 C 0.114 3.886 7 N -0.627 5.627 8 C 0.553 3.447 9 O -0.645 6.645 10 C -0.618 4.618 11 H 0.072 0.928 12 C 0.030 3.970 13 N -0.852 5.852 14 Si 1.151 2.849 15 H -0.292 1.292 16 H -0.290 1.290 17 H -0.299 1.299 18 C 0.089 3.911 19 H 0.083 0.917 20 H 0.074 0.926 21 H 0.061 0.939 22 H 0.379 0.621 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.277 0.723 30 H 0.065 0.935 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 -2.164 9.317 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.070 3.930 3 O -0.379 6.379 4 C -0.135 4.135 5 C -0.162 4.162 6 C -0.009 4.009 7 N -0.359 5.359 8 C 0.360 3.640 9 O -0.540 6.540 10 C -0.654 4.654 11 H 0.090 0.910 12 C -0.184 4.184 13 N -0.481 5.481 14 Si 0.980 3.020 15 H -0.219 1.219 16 H -0.218 1.218 17 H -0.229 1.229 18 C -0.034 4.034 19 H 0.102 0.898 20 H 0.093 0.907 21 H 0.080 0.920 22 H 0.227 0.773 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.462 -1.196 8.236 14.985 hybrid contribution -0.040 -1.133 0.634 1.299 sum -12.502 -2.329 8.870 15.505 Atomic orbital electron populations 1.22338 0.92840 1.03960 1.03108 1.21758 0.93956 0.82218 0.95028 1.86494 1.78368 1.23734 1.49273 1.21533 0.94997 1.00783 0.96234 1.21855 0.96598 1.00382 0.97414 1.21759 0.98614 0.96193 0.84335 1.47612 1.05568 1.63977 1.18764 1.18313 0.88092 0.75897 0.81657 1.90182 1.75933 1.56492 1.31345 1.22257 0.91032 1.33280 1.18874 0.91012 1.27752 0.94534 0.98365 0.97777 1.70630 1.11498 1.33749 1.32199 0.82236 0.72196 0.73208 0.74371 1.21927 1.21760 1.22894 1.22207 0.81243 1.00979 0.98984 0.89823 0.90712 0.92038 0.77327 0.90077 0.88602 0.93716 0.88859 0.91198 0.91417 0.91269 0.91691 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.82 71.98 0.64 -2.64 16 2 C 0.11 3.13 1.01 -10.72 -0.01 3.12 16 3 O -0.57 -19.16 12.17 -148.98 -1.81 -20.98 16 4 C -0.10 -2.41 4.92 30.62 0.15 -2.26 16 5 C -0.12 -3.72 5.96 30.82 0.18 -3.53 16 6 C 0.11 4.16 6.38 86.51 0.55 4.71 16 7 N -0.63 -27.48 2.91 -823.16 -2.39 -29.87 16 8 C 0.55 30.46 7.24 86.36 0.63 31.08 16 9 O -0.65 -38.05 11.99 -4.29 -0.05 -38.10 16 10 C -0.62 -35.99 9.16 24.83 0.23 -35.76 16 11 H 0.07 4.13 6.02 -2.91 -0.02 4.11 16 12 C 0.03 1.75 5.52 85.30 0.47 2.22 16 13 N -0.85 -50.35 13.65 21.84 0.30 -50.05 16 14 Si 1.15 61.03 26.37 68.60 1.81 62.83 16 15 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 16 H -0.29 -15.80 6.60 99.48 0.66 -15.14 16 17 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 18 C 0.09 3.14 5.34 86.36 0.46 3.60 16 19 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 20 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.38 11.36 9.05 -74.06 -0.67 10.69 16 23 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.04 1.62 7.61 -2.38 -0.02 1.60 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.82 5.35 -2.39 -0.01 2.81 16 29 H 0.28 15.81 8.72 -92.71 -0.81 15.00 16 30 H 0.06 2.57 7.03 -2.39 -0.02 2.55 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.39 251.16 1.51 -68.87 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.37 Total: 6.74 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 3.29 Total: 0.55 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -2.10 Total: -79.93 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -1.87 Total: -59.07 kcal Atomic # 14 Polarization: 61.03 SS G_CDS: 1.81 Total: 62.83 kcal Total: -70.39 1.51 -68.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157427918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.272 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds