Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99423 * 2 1 4 4 C 1.46898 * 111.00177 * 123.95510 * 2 1 3 5 5 C 1.53002 * 112.84999 * 294.27667 * 4 2 1 6 6 N 1.46494 * 109.47297 * 162.95578 * 5 4 2 7 7 C 1.46505 * 119.99942 * 93.09126 * 6 5 4 8 8 C 1.36938 * 120.00545 * 273.09450 * 6 5 4 9 9 H 1.08000 * 119.99697 * 27.93409 * 8 6 5 10 10 C 1.38813 * 120.00549 * 207.93534 * 8 6 5 11 11 N 1.31619 * 119.99300 * 7.81924 * 10 8 6 12 12 Si 1.86793 * 120.00320 * 187.82062 * 10 8 6 13 13 H 1.48505 * 109.47226 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47230 * 119.99709 * 12 10 8 15 15 H 1.48501 * 109.47086 * 240.00284 * 12 10 8 16 16 C 1.53778 * 113.61418 * 65.47152 * 4 2 1 17 17 C 1.53957 * 87.01847 * 89.23180 * 16 4 2 18 18 C 1.53775 * 87.11002 * 25.36216 * 17 16 4 19 19 H 1.08999 * 109.46912 * 295.28324 * 1 2 3 20 20 H 1.08991 * 109.46995 * 55.28898 * 1 2 3 21 21 H 1.08996 * 109.46697 * 175.29005 * 1 2 3 22 22 H 1.09002 * 109.46731 * 183.95506 * 3 2 1 23 23 H 1.08993 * 109.47615 * 303.95543 * 3 2 1 24 24 H 1.09002 * 109.47006 * 63.95802 * 3 2 1 25 25 H 1.09004 * 109.47001 * 282.96139 * 5 4 2 26 26 H 1.09002 * 109.47238 * 42.95740 * 5 4 2 27 27 H 1.09000 * 109.46596 * 95.20563 * 7 6 5 28 28 H 1.09000 * 109.47186 * 215.20568 * 7 6 5 29 29 H 1.09000 * 109.47210 * 335.21168 * 7 6 5 30 30 H 0.97003 * 119.99365 * 179.97438 * 11 10 8 31 31 H 1.09006 * 113.61282 * 203.74883 * 16 4 2 32 32 H 1.09001 * 113.61571 * 334.65125 * 16 4 2 33 33 H 1.09006 * 113.53287 * 270.81177 * 17 16 4 34 34 H 1.08992 * 113.74131 * 139.94589 * 17 16 4 35 35 H 1.09006 * 113.61357 * 220.08984 * 18 17 16 36 36 H 1.08997 * 113.69113 * 89.20228 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6673 -0.1257 2.4878 6 7 1.8510 -1.1133 3.5541 7 6 3.1330 -1.2020 4.2576 8 6 0.8244 -1.9538 3.8934 9 1 0.0838 -2.2265 3.1561 10 6 0.7356 -2.4552 5.1847 11 7 1.5432 -2.0059 6.1219 12 14 -0.5299 -3.7673 5.5923 13 1 -1.3091 -4.0994 4.3725 14 1 0.1615 -4.9859 6.0844 15 1 -1.4477 -3.2601 6.6438 16 6 1.6702 -2.2676 1.0725 17 6 2.9829 -2.4358 0.2858 18 6 3.4748 -1.1575 0.9848 19 1 -0.3633 0.4389 0.9292 20 1 -0.3633 0.5851 -0.8447 21 1 -0.3632 -1.0242 -0.0844 22 1 3.0827 1.3433 -0.0709 23 1 1.5897 1.9164 -0.8523 24 1 1.7043 1.8723 0.9234 25 1 2.3312 0.7217 2.6591 26 1 0.6329 0.2179 2.4852 27 1 3.0868 -0.6117 5.1728 28 1 3.3396 -2.2428 4.5066 29 1 3.9264 -0.8172 3.6168 30 1 1.4809 -2.3560 7.0244 31 1 1.6784 -2.7586 2.0456 32 1 0.7782 -2.4962 0.4893 33 1 2.8617 -2.3252 -0.7918 34 1 3.5470 -3.3275 0.5590 35 1 4.0375 -0.4912 0.3309 36 1 3.9776 -1.3431 1.9339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165148064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 60.284007 kcal Electronic energy + Delta-G solvation = -15484.566233 eV Core-core repulsion = 13198.867418 eV Total energy + Delta-G solvation = -2285.698815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.48271 -35.07766 -34.19878 -31.09329 -27.63784 -27.24199 -25.99590 -24.22310 -24.03074 -21.86942 -20.70215 -17.63182 -16.73152 -15.57892 -14.83448 -14.50803 -14.39831 -13.73526 -13.40408 -13.19660 -13.04328 -12.14228 -11.86110 -11.71731 -11.45419 -11.33000 -11.25641 -10.88081 -10.82980 -10.52990 -10.21070 -9.98251 -9.85824 -9.72076 -9.58719 -9.22028 -8.56813 -7.91826 -6.53267 -5.69396 -3.21482 3.37412 3.45132 3.46650 4.35110 4.52985 5.21094 5.40007 5.47186 5.51055 5.59839 5.67306 5.73618 5.82831 5.88227 5.97034 6.12354 6.21156 6.30040 6.34258 6.51455 6.53477 6.63906 6.65620 6.74006 6.92100 7.17467 7.21739 7.39444 7.50287 7.76949 7.79051 7.83386 8.45809 9.27517 9.89888 10.41811 11.33504 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036226 B = 0.010387 C = 0.009946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.738477 B = 2694.979611 C = 2814.538632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.140 3.860 6 N -0.593 5.593 7 C 0.161 3.839 8 C -0.252 4.252 9 H 0.069 0.931 10 C 0.004 3.996 11 N -0.906 5.906 12 Si 0.900 3.100 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.291 1.291 16 C -0.122 4.122 17 C -0.133 4.133 18 C -0.123 4.123 19 H 0.030 0.970 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.026 0.974 25 H 0.033 0.967 26 H 0.041 0.959 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.000 1.000 30 H 0.251 0.749 31 H 0.124 0.876 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 3.052 -10.003 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.248 5.248 3 C -0.123 4.123 4 C -0.035 4.035 5 C 0.011 3.989 6 N -0.317 5.317 7 C 0.016 3.984 8 C -0.381 4.381 9 H 0.086 0.914 10 C -0.194 4.194 11 N -0.551 5.551 12 Si 0.731 3.269 13 H -0.202 1.202 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.160 4.160 17 C -0.171 4.171 18 C -0.160 4.160 19 H 0.049 0.951 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.563 2.778 -10.247 10.732 hybrid contribution -0.974 -0.209 1.051 1.448 sum 0.589 2.569 -9.196 9.566 Atomic orbital electron populations 1.22308 0.88058 1.02086 0.99892 1.62119 1.07406 1.12838 1.42407 1.22284 1.00538 0.89599 0.99874 1.23061 0.95760 0.94795 0.89914 1.21051 0.98334 0.91205 0.88299 1.43713 1.10851 1.38228 1.38872 1.20869 0.83939 0.99895 0.93664 1.19168 1.04905 1.20781 0.93258 0.91356 1.25175 0.98436 1.00277 0.95534 1.70048 1.39655 1.43856 1.01494 0.86240 0.81188 0.81400 0.78110 1.20216 1.21654 1.21752 1.23304 0.95657 0.94811 1.02193 1.22705 0.98497 0.97095 0.98795 1.22962 0.95278 0.97272 1.00521 0.95111 0.92416 0.91448 0.91805 0.92318 0.95496 0.94828 0.94037 0.95168 0.94376 0.98139 0.93856 0.85848 0.93310 0.91243 0.92937 0.92904 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.24 60.07 0.56 0.93 16 2 N -0.52 -8.54 4.81 -234.46 -1.13 -9.67 16 3 C 0.03 0.36 9.18 60.06 0.55 0.91 16 4 C 0.06 1.04 0.42 -130.79 -0.06 0.99 16 5 C 0.14 2.98 4.38 -4.04 -0.02 2.96 16 6 N -0.59 -14.66 2.17 -181.12 -0.39 -15.05 16 7 C 0.16 3.93 8.29 59.85 0.50 4.43 16 8 C -0.25 -6.74 7.50 -15.06 -0.11 -6.85 16 9 H 0.07 1.81 7.08 -52.49 -0.37 1.44 16 10 C 0.00 0.12 5.20 -17.43 -0.09 0.03 16 11 N -0.91 -26.32 10.74 55.49 0.60 -25.73 16 12 Si 0.90 21.76 29.56 -169.99 -5.02 16.73 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 C -0.12 -2.36 6.30 -25.83 -0.16 -2.52 16 17 C -0.13 -2.28 8.00 -25.83 -0.21 -2.48 16 18 C -0.12 -2.15 7.13 -25.92 -0.18 -2.34 16 19 H 0.03 0.50 6.43 -51.93 -0.33 0.17 16 20 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 21 H 0.07 1.06 6.64 -51.93 -0.34 0.71 16 22 H 0.06 0.88 7.08 -51.93 -0.37 0.51 16 23 H 0.06 0.72 8.11 -51.93 -0.42 0.29 16 24 H 0.03 0.40 6.97 -51.93 -0.36 0.03 16 25 H 0.03 0.70 7.56 -51.93 -0.39 0.30 16 26 H 0.04 0.92 6.22 -51.93 -0.32 0.60 16 27 H 0.03 0.81 7.25 -51.93 -0.38 0.43 16 28 H 0.04 0.99 7.54 -51.93 -0.39 0.60 16 29 H 0.00 0.00 6.10 -51.93 -0.32 -0.31 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.12 2.78 5.01 -51.93 -0.26 2.52 16 32 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.85 7.17 -51.93 -0.37 0.48 16 36 H 0.09 1.68 5.26 -51.93 -0.27 1.41 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -28.31 268.00 -6.79 -35.10 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.65 Total: -1.49 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 0.77 Total: -3.94 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.92 Total: -50.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.31 -6.79 -35.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165148064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.383 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds