Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99423 * 2 1 4 4 C 1.46898 * 111.00177 * 123.95510 * 2 1 3 5 5 C 1.53002 * 112.84999 * 294.27667 * 4 2 1 6 6 N 1.46494 * 109.47297 * 162.95578 * 5 4 2 7 7 C 1.46505 * 119.99942 * 93.09126 * 6 5 4 8 8 C 1.36938 * 120.00545 * 273.09450 * 6 5 4 9 9 H 1.08000 * 119.99697 * 27.93409 * 8 6 5 10 10 C 1.38813 * 120.00549 * 207.93534 * 8 6 5 11 11 N 1.31619 * 119.99300 * 7.81924 * 10 8 6 12 12 Si 1.86793 * 120.00320 * 187.82062 * 10 8 6 13 13 H 1.48505 * 109.47226 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47230 * 119.99709 * 12 10 8 15 15 H 1.48501 * 109.47086 * 240.00284 * 12 10 8 16 16 C 1.53778 * 113.61418 * 65.47152 * 4 2 1 17 17 C 1.53957 * 87.01847 * 89.23180 * 16 4 2 18 18 C 1.53775 * 87.11002 * 25.36216 * 17 16 4 19 19 H 1.08999 * 109.46912 * 295.28324 * 1 2 3 20 20 H 1.08991 * 109.46995 * 55.28898 * 1 2 3 21 21 H 1.08996 * 109.46697 * 175.29005 * 1 2 3 22 22 H 1.09002 * 109.46731 * 183.95506 * 3 2 1 23 23 H 1.08993 * 109.47615 * 303.95543 * 3 2 1 24 24 H 1.09002 * 109.47006 * 63.95802 * 3 2 1 25 25 H 1.09004 * 109.47001 * 282.96139 * 5 4 2 26 26 H 1.09002 * 109.47238 * 42.95740 * 5 4 2 27 27 H 1.09000 * 109.46596 * 95.20563 * 7 6 5 28 28 H 1.09000 * 109.47186 * 215.20568 * 7 6 5 29 29 H 1.09000 * 109.47210 * 335.21168 * 7 6 5 30 30 H 0.97003 * 119.99365 * 179.97438 * 11 10 8 31 31 H 1.09006 * 113.61282 * 203.74883 * 16 4 2 32 32 H 1.09001 * 113.61571 * 334.65125 * 16 4 2 33 33 H 1.09006 * 113.53287 * 270.81177 * 17 16 4 34 34 H 1.08992 * 113.74131 * 139.94589 * 17 16 4 35 35 H 1.09006 * 113.61357 * 220.08984 * 18 17 16 36 36 H 1.08997 * 113.69113 * 89.20228 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6673 -0.1257 2.4878 6 7 1.8510 -1.1133 3.5541 7 6 3.1330 -1.2020 4.2576 8 6 0.8244 -1.9538 3.8934 9 1 0.0838 -2.2265 3.1561 10 6 0.7356 -2.4552 5.1847 11 7 1.5432 -2.0059 6.1219 12 14 -0.5299 -3.7673 5.5923 13 1 -1.3091 -4.0994 4.3725 14 1 0.1615 -4.9859 6.0844 15 1 -1.4477 -3.2601 6.6438 16 6 1.6702 -2.2676 1.0725 17 6 2.9829 -2.4358 0.2858 18 6 3.4748 -1.1575 0.9848 19 1 -0.3633 0.4389 0.9292 20 1 -0.3633 0.5851 -0.8447 21 1 -0.3632 -1.0242 -0.0844 22 1 3.0827 1.3433 -0.0709 23 1 1.5897 1.9164 -0.8523 24 1 1.7043 1.8723 0.9234 25 1 2.3312 0.7217 2.6591 26 1 0.6329 0.2179 2.4852 27 1 3.0868 -0.6117 5.1728 28 1 3.3396 -2.2428 4.5066 29 1 3.9264 -0.8172 3.6168 30 1 1.4809 -2.3560 7.0244 31 1 1.6784 -2.7586 2.0456 32 1 0.7782 -2.4962 0.4893 33 1 2.8617 -2.3252 -0.7918 34 1 3.5470 -3.3275 0.5590 35 1 4.0375 -0.4912 0.3309 36 1 3.9776 -1.3431 1.9339 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165148064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 42.768797 kcal Electronic energy + Delta-G solvation = -15485.325749 eV Core-core repulsion = 13198.867418 eV Total energy + Delta-G solvation = -2286.458331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96736 -36.89291 -35.62290 -33.12361 -28.98065 -28.93709 -27.90166 -25.74473 -25.49901 -23.47521 -22.40036 -19.10830 -18.74102 -17.04368 -16.72909 -16.10575 -15.74222 -15.40759 -15.11602 -14.75863 -14.50871 -13.79021 -13.63923 -13.26340 -12.98955 -12.78304 -12.69183 -12.58032 -12.53583 -12.34518 -11.96244 -11.80422 -11.63601 -11.38531 -11.08575 -10.72222 -10.62365 -9.40199 -8.48036 -7.78443 -5.33134 1.44365 1.46303 1.55844 2.50017 3.05673 3.33126 3.68936 3.83736 4.09130 4.19419 4.26147 4.35186 4.49228 4.66976 4.70190 4.72574 4.84995 4.89665 4.93221 5.00950 5.03489 5.10088 5.19885 5.23283 5.31648 5.34118 5.64992 5.70215 5.73022 5.75335 6.23007 6.31964 6.41270 7.18711 7.88977 8.35736 9.22154 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036226 B = 0.010387 C = 0.009946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.738477 B = 2694.979611 C = 2814.538632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.522 5.522 3 C 0.024 3.976 4 C 0.066 3.934 5 C 0.142 3.858 6 N -0.605 5.605 7 C 0.178 3.822 8 C -0.246 4.246 9 H 0.068 0.932 10 C -0.052 4.052 11 N -0.939 5.939 12 Si 0.962 3.038 13 H -0.266 1.266 14 H -0.292 1.292 15 H -0.294 1.294 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.118 4.118 19 H 0.015 0.985 20 H 0.086 0.914 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.017 0.983 25 H 0.037 0.963 26 H 0.028 0.972 27 H 0.001 0.999 28 H 0.014 0.986 29 H 0.031 0.969 30 H 0.246 0.754 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 3.343 -12.134 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.124 4.124 4 C -0.026 4.026 5 C 0.014 3.986 6 N -0.328 5.328 7 C 0.033 3.967 8 C -0.376 4.376 9 H 0.086 0.914 10 C -0.247 4.247 11 N -0.586 5.586 12 Si 0.790 3.210 13 H -0.190 1.190 14 H -0.219 1.219 15 H -0.221 1.221 16 C -0.167 4.167 17 C -0.156 4.156 18 C -0.156 4.156 19 H 0.033 0.967 20 H 0.105 0.895 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.019 0.981 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.489 3.084 -12.420 12.884 hybrid contribution -0.960 -0.231 1.637 1.911 sum 0.529 2.854 -10.783 11.167 Atomic orbital electron populations 1.22351 0.87498 1.02106 1.00322 1.62175 1.07932 1.13990 1.40450 1.22384 1.01112 0.88362 1.00539 1.22820 0.96596 0.94215 0.88993 1.21148 0.97706 0.90811 0.88926 1.43870 1.10532 1.38799 1.39617 1.20593 0.84960 0.97957 0.93192 1.19379 1.04786 1.20363 0.93046 0.91393 1.25876 1.00517 1.02643 0.95645 1.70210 1.41437 1.45389 1.01542 0.85276 0.78969 0.78831 0.77891 1.18998 1.21884 1.22123 1.23157 0.97232 0.95391 1.00907 1.22630 0.96650 0.97047 0.99271 1.22881 0.94581 0.97918 1.00213 0.96672 0.89529 0.92122 0.91083 0.89767 0.96447 0.94415 0.95342 0.98056 0.96761 0.95029 0.94428 0.89336 0.93054 0.89608 0.92484 0.90894 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.24 127.69 1.18 1.90 16 2 N -0.52 -15.54 4.81 -895.70 -4.31 -19.84 16 3 C 0.02 0.60 9.18 127.69 1.17 1.78 16 4 C 0.07 2.31 0.42 4.05 0.00 2.31 16 5 C 0.14 5.95 4.38 86.38 0.38 6.32 16 6 N -0.60 -30.09 2.17 -726.92 -1.58 -31.67 16 7 C 0.18 8.83 8.29 127.77 1.06 9.89 16 8 C -0.25 -13.28 7.50 84.03 0.63 -12.65 16 9 H 0.07 3.63 7.08 -2.91 -0.02 3.60 16 10 C -0.05 -2.90 5.20 84.86 0.44 -2.46 16 11 N -0.94 -55.90 10.74 21.65 0.23 -55.67 16 12 Si 0.96 45.33 29.56 68.60 2.03 47.36 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 16 C -0.13 -4.83 6.30 31.18 0.20 -4.63 16 17 C -0.12 -3.75 8.00 31.18 0.25 -3.50 16 18 C -0.12 -3.87 7.13 31.12 0.22 -3.64 16 19 H 0.01 0.47 6.43 -2.39 -0.02 0.45 16 20 H 0.09 1.94 8.11 -2.39 -0.02 1.92 16 21 H 0.06 1.79 6.64 -2.39 -0.02 1.77 16 22 H 0.07 1.69 7.08 -2.39 -0.02 1.68 16 23 H 0.08 1.71 8.11 -2.39 -0.02 1.69 16 24 H 0.02 0.47 6.97 -2.39 -0.02 0.45 16 25 H 0.04 1.53 7.56 -2.38 -0.02 1.51 16 26 H 0.03 1.26 6.22 -2.39 -0.01 1.24 16 27 H 0.00 0.07 7.25 -2.39 -0.02 0.05 16 28 H 0.01 0.74 7.54 -2.39 -0.02 0.72 16 29 H 0.03 1.34 6.10 -2.39 -0.01 1.33 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 31 H 0.09 3.99 5.01 -2.38 -0.01 3.98 16 32 H 0.05 1.85 6.66 -2.39 -0.02 1.84 16 33 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 2.10 7.17 -2.38 -0.02 2.08 16 36 H 0.07 2.62 5.26 -2.39 -0.01 2.60 16 Total: -1.00 -60.31 268.00 2.95 -57.36 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.05 Total: 7.16 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.53 Total: -4.70 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -5.65 Total: -107.18 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -60.31 2.95 -57.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165148064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.127 kcal (2) G-P(sol) polarization free energy of solvation -60.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds