Wall clock time and date at job start Sun Mar 29 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.84886 * 2 1 4 4 C 1.53790 * 113.61566 * 228.69532 * 2 1 3 5 5 H 1.08997 * 113.61084 * 105.46520 * 4 2 1 6 6 O 1.42899 * 113.61196 * 334.56939 * 4 2 1 7 7 C 1.53775 * 87.07946 * 220.01618 * 4 2 1 8 8 C 1.53773 * 113.61817 * 131.19813 * 2 1 3 9 9 H 1.09002 * 113.61535 * 254.61447 * 8 2 1 10 10 N 1.46506 * 113.61480 * 25.43111 * 8 2 1 11 11 C 1.34771 * 120.00406 * 205.00266 * 10 8 2 12 12 O 1.21697 * 119.99716 * 0.02562 * 11 10 8 13 13 C 1.46374 * 120.00464 * 179.97438 * 11 10 8 14 14 H 1.08005 * 119.99554 * 0.02562 * 13 11 10 15 15 C 1.40052 * 120.00124 * 179.97438 * 13 11 10 16 16 N 1.30669 * 120.00053 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 119.99727 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47526 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47226 * 120.00107 * 17 15 13 20 20 H 1.48498 * 109.47130 * 240.00314 * 17 15 13 21 21 H 1.09002 * 109.47153 * 288.80152 * 1 2 3 22 22 H 1.09001 * 109.46832 * 168.80343 * 1 2 3 23 23 H 1.09004 * 109.47261 * 48.80324 * 1 2 3 24 24 H 1.08995 * 109.46975 * 69.66849 * 3 2 1 25 25 H 1.09005 * 109.46841 * 189.66742 * 3 2 1 26 26 H 1.09002 * 109.47267 * 309.66699 * 3 2 1 27 27 H 0.96697 * 113.99617 * 179.97438 * 6 4 2 28 28 H 1.08998 * 113.61939 * 270.88180 * 7 4 2 29 29 H 1.08999 * 113.68872 * 139.98916 * 7 4 2 30 30 H 0.96999 * 119.99357 * 25.00215 * 10 8 2 31 31 H 0.96994 * 119.99899 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9301 -1.0585 5 1 2.5649 -0.4006 -1.9142 6 8 1.2919 -2.0113 -1.4372 7 6 3.1923 -1.3135 0.0012 8 6 2.1461 -0.9280 1.0601 9 1 2.5638 -0.3970 1.9155 10 7 1.2704 -2.0358 1.4505 11 6 1.4124 -2.6131 2.6600 12 8 2.2678 -2.2139 3.4281 13 6 0.5372 -3.7196 3.0502 14 1 -0.2221 -4.0737 2.3687 15 6 0.6852 -4.3198 4.3069 16 7 1.6043 -3.8918 5.1313 17 14 -0.4312 -5.7323 4.8046 18 1 -1.3807 -6.0254 3.7009 19 1 0.3899 -6.9377 5.0836 20 1 -1.1903 -5.3571 6.0245 21 1 -0.3633 0.3312 0.9728 22 1 -0.3633 -1.0081 -0.1996 23 1 -0.3634 0.6769 -0.7733 24 1 1.9361 1.8834 0.9636 25 1 3.1988 1.3514 -0.1726 26 1 1.6607 1.9996 -0.7911 27 1 1.6737 -2.5995 -2.1030 28 1 4.0711 -0.6686 0.0006 29 1 3.4454 -2.3737 0.0032 30 1 0.5885 -2.3538 0.8384 31 1 1.7065 -4.3072 6.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168277961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:05 Heat of formation + Delta-G solvation = -73.810120 kcal Electronic energy + Delta-G solvation = -14768.129054 eV Core-core repulsion = 12243.063725 eV Total energy + Delta-G solvation = -2525.065329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98652 -36.59660 -34.83589 -32.52875 -31.50924 -29.92470 -27.04257 -26.22999 -23.67174 -22.17268 -19.73598 -17.98937 -17.37521 -16.46681 -15.32040 -14.94202 -14.55840 -14.50148 -13.69950 -13.24778 -12.49830 -12.43482 -12.18897 -12.11365 -11.88873 -11.55235 -11.41568 -11.11083 -10.98621 -10.56344 -10.40325 -10.23555 -10.09392 -9.65463 -9.19418 -8.80014 -7.52641 -7.33797 -6.12216 -4.56604 3.16679 3.24691 3.29726 4.13263 4.21677 4.62428 4.69928 4.92952 5.22944 5.30090 5.40418 5.52090 5.65100 5.86265 5.93036 6.02255 6.11872 6.14506 6.24122 6.34628 6.47152 6.61702 6.76369 6.82724 7.50092 7.87819 8.08674 8.28027 8.45503 9.09362 9.69168 10.67799 10.87848 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046916 B = 0.008311 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.670042 B = 3368.313750 C = 3535.550630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.122 4.122 4 C 0.089 3.911 5 H 0.057 0.943 6 O -0.543 6.543 7 C -0.193 4.193 8 C 0.157 3.843 9 H 0.087 0.913 10 N -0.739 5.739 11 C 0.555 3.445 12 O -0.584 6.584 13 C -0.543 4.543 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.906 3.094 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.375 0.625 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.388 0.612 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 5.383 -11.650 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.098 4.098 3 C -0.180 4.180 4 C 0.030 3.970 5 H 0.075 0.925 6 O -0.348 6.348 7 C -0.233 4.233 8 C 0.049 3.951 9 H 0.105 0.895 10 N -0.393 5.393 11 C 0.359 3.641 12 O -0.467 6.467 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.222 0.778 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.127 5.926 -10.441 12.006 hybrid contribution -0.360 -1.138 -0.508 1.297 sum -0.487 4.788 -10.949 11.961 Atomic orbital electron populations 1.21462 0.93651 1.02318 1.00831 1.22411 0.96680 0.94408 0.96269 1.21512 1.00322 0.94008 1.02138 1.22781 0.91216 0.88444 0.94551 0.92516 1.86431 1.44155 1.41192 1.63041 1.24154 0.97854 1.02360 0.98907 1.21336 0.90425 0.88851 0.94538 0.89520 1.45844 1.38146 1.36021 1.19305 1.18254 0.84236 0.82762 0.78850 1.90583 1.38153 1.66129 1.51865 1.20922 1.18674 1.17026 1.01424 0.91462 1.25708 0.94666 0.96905 0.95948 1.70039 1.27406 1.35947 1.06439 0.86339 0.80478 0.81081 0.78982 1.18782 1.20237 1.20211 0.92654 0.91222 0.93694 0.91692 0.92408 0.92552 0.77832 0.89917 0.90808 0.77825 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.43 37.16 0.31 -1.66 16 2 C -0.10 -1.51 1.34 -153.69 -0.21 -1.71 16 3 C -0.12 -1.55 9.07 37.16 0.34 -1.21 16 4 C 0.09 1.28 4.70 -25.92 -0.12 1.16 16 5 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 6 O -0.54 -7.81 10.89 -35.23 -0.38 -8.19 16 7 C -0.19 -3.24 7.36 -25.92 -0.19 -3.43 16 8 C 0.16 3.16 3.78 -67.12 -0.25 2.91 16 9 H 0.09 1.97 7.42 -51.93 -0.39 1.59 16 10 N -0.74 -17.46 4.66 -54.43 -0.25 -17.71 16 11 C 0.56 16.35 7.75 -12.99 -0.10 16.25 16 12 O -0.58 -19.41 14.62 5.19 0.08 -19.34 16 13 C -0.54 -15.88 9.54 -35.63 -0.34 -16.22 16 14 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 15 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 16 N -0.77 -23.60 11.83 55.55 0.66 -22.95 16 17 Si 0.91 20.67 29.56 -169.99 -5.02 15.64 16 18 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.07 1.18 5.68 -51.93 -0.29 0.88 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.67 7.34 -51.93 -0.38 0.29 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.37 3.75 9.12 45.56 0.42 4.17 16 28 H 0.08 1.22 7.64 -51.93 -0.40 0.82 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.39 8.58 6.08 -40.82 -0.25 8.33 16 31 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 258.56 15.07 3.90 3.90 Total: -1.00 -35.03 258.56 -5.06 -40.09 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.37 Total: 10.07 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.66 Total: -1.52 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.40 Total: -40.65 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.31 Total: -27.53 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.03 -5.06 -40.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168277961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.720 kcal (2) G-P(sol) polarization free energy of solvation -35.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds