Wall clock time and date at job start Sun Mar 29 2020 22:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.84886 * 2 1 4 4 C 1.53790 * 113.61566 * 228.69532 * 2 1 3 5 5 H 1.08997 * 113.61084 * 105.46520 * 4 2 1 6 6 O 1.42899 * 113.61196 * 334.56939 * 4 2 1 7 7 C 1.53775 * 87.07946 * 220.01618 * 4 2 1 8 8 C 1.53773 * 113.61817 * 131.19813 * 2 1 3 9 9 H 1.09002 * 113.61535 * 254.61447 * 8 2 1 10 10 N 1.46506 * 113.61480 * 25.43111 * 8 2 1 11 11 C 1.34771 * 120.00406 * 205.00266 * 10 8 2 12 12 O 1.21697 * 119.99716 * 0.02562 * 11 10 8 13 13 C 1.46374 * 120.00464 * 179.97438 * 11 10 8 14 14 H 1.08005 * 119.99554 * 0.02562 * 13 11 10 15 15 C 1.40052 * 120.00124 * 179.97438 * 13 11 10 16 16 N 1.30669 * 120.00053 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 119.99727 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47526 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47226 * 120.00107 * 17 15 13 20 20 H 1.48498 * 109.47130 * 240.00314 * 17 15 13 21 21 H 1.09002 * 109.47153 * 288.80152 * 1 2 3 22 22 H 1.09001 * 109.46832 * 168.80343 * 1 2 3 23 23 H 1.09004 * 109.47261 * 48.80324 * 1 2 3 24 24 H 1.08995 * 109.46975 * 69.66849 * 3 2 1 25 25 H 1.09005 * 109.46841 * 189.66742 * 3 2 1 26 26 H 1.09002 * 109.47267 * 309.66699 * 3 2 1 27 27 H 0.96697 * 113.99617 * 179.97438 * 6 4 2 28 28 H 1.08998 * 113.61939 * 270.88180 * 7 4 2 29 29 H 1.08999 * 113.68872 * 139.98916 * 7 4 2 30 30 H 0.96999 * 119.99357 * 25.00215 * 10 8 2 31 31 H 0.96994 * 119.99899 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9301 -1.0585 5 1 2.5649 -0.4006 -1.9142 6 8 1.2919 -2.0113 -1.4372 7 6 3.1923 -1.3135 0.0012 8 6 2.1461 -0.9280 1.0601 9 1 2.5638 -0.3970 1.9155 10 7 1.2704 -2.0358 1.4505 11 6 1.4124 -2.6131 2.6600 12 8 2.2678 -2.2139 3.4281 13 6 0.5372 -3.7196 3.0502 14 1 -0.2221 -4.0737 2.3687 15 6 0.6852 -4.3198 4.3069 16 7 1.6043 -3.8918 5.1313 17 14 -0.4312 -5.7323 4.8046 18 1 -1.3807 -6.0254 3.7009 19 1 0.3899 -6.9377 5.0836 20 1 -1.1903 -5.3571 6.0245 21 1 -0.3633 0.3312 0.9728 22 1 -0.3633 -1.0081 -0.1996 23 1 -0.3634 0.6769 -0.7733 24 1 1.9361 1.8834 0.9636 25 1 3.1988 1.3514 -0.1726 26 1 1.6607 1.9996 -0.7911 27 1 1.6737 -2.5995 -2.1030 28 1 4.0711 -0.6686 0.0006 29 1 3.4454 -2.3737 0.0032 30 1 0.5885 -2.3538 0.8384 31 1 1.7065 -4.3072 6.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168277961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:04 Heat of formation + Delta-G solvation = -102.057514 kcal Electronic energy + Delta-G solvation = -14769.353953 eV Core-core repulsion = 12243.063725 eV Total energy + Delta-G solvation = -2526.290228 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.38289 -38.71217 -36.06981 -34.69196 -33.47997 -31.28148 -28.64880 -27.92195 -25.20755 -23.52532 -21.73625 -19.70548 -18.90697 -17.96006 -17.39769 -16.46127 -16.13300 -15.86340 -15.37054 -14.96671 -14.40427 -13.92584 -13.76240 -13.23470 -13.15307 -13.04506 -12.92460 -12.75954 -12.74841 -12.60885 -12.00874 -11.81443 -11.61027 -10.97673 -10.90679 -10.46921 -9.84910 -9.32008 -8.29570 -6.85897 1.38242 1.38838 1.56982 2.24122 2.46184 2.99068 3.19899 3.53057 3.66964 3.89646 4.07200 4.15013 4.33383 4.56060 4.75760 4.79574 4.82273 4.91928 5.03065 5.08079 5.16982 5.20645 5.30800 5.45544 5.55845 5.90851 6.27242 6.42044 6.86018 6.99504 7.62058 8.51320 8.68466 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046916 B = 0.008311 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.670042 B = 3368.313750 C = 3535.550630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.087 4.087 3 C -0.120 4.120 4 C 0.109 3.891 5 H 0.101 0.899 6 O -0.561 6.561 7 C -0.188 4.188 8 C 0.124 3.876 9 H 0.047 0.953 10 N -0.727 5.727 11 C 0.537 3.463 12 O -0.636 6.636 13 C -0.574 4.574 14 H 0.082 0.918 15 C 0.027 3.973 16 N -0.822 5.822 17 Si 1.000 3.000 18 H -0.248 1.248 19 H -0.267 1.267 20 H -0.267 1.267 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.395 0.605 28 H 0.106 0.894 29 H 0.050 0.950 30 H 0.396 0.604 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 5.231 -13.737 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.088 4.088 3 C -0.177 4.177 4 C 0.050 3.950 5 H 0.118 0.882 6 O -0.369 6.369 7 C -0.228 4.228 8 C 0.016 3.984 9 H 0.065 0.935 10 N -0.380 5.380 11 C 0.341 3.659 12 O -0.523 6.523 13 C -0.610 4.610 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.452 5.452 17 Si 0.819 3.181 18 H -0.171 1.171 19 H -0.191 1.191 20 H -0.192 1.192 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.245 0.755 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.231 0.769 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.121 5.793 -12.607 13.919 hybrid contribution -0.019 -1.039 0.114 1.046 sum -1.140 4.754 -12.493 13.416 Atomic orbital electron populations 1.21441 0.93801 1.02093 1.00789 1.22446 0.96637 0.95532 0.94215 1.21539 1.01341 0.92075 1.02747 1.22665 0.89383 0.88013 0.94944 0.88168 1.86387 1.44678 1.41824 1.63997 1.24158 0.98620 1.01453 0.98540 1.21727 0.92406 0.89211 0.95020 0.93491 1.45483 1.38489 1.36312 1.17695 1.18645 0.83897 0.83255 0.80085 1.90530 1.40180 1.67777 1.53862 1.21432 1.19310 1.17622 1.02683 0.89976 1.27001 0.96259 1.00123 0.95380 1.70201 1.29689 1.38037 1.07263 0.84953 0.77921 0.76291 0.78978 1.17149 1.19133 1.19159 0.94590 0.92713 0.90600 0.92772 0.91020 0.89542 0.75496 0.87612 0.93064 0.76892 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.43 71.98 0.61 -3.11 16 2 C -0.09 -2.58 1.34 -51.65 -0.07 -2.64 16 3 C -0.12 -2.71 9.07 71.98 0.65 -2.06 16 4 C 0.11 2.79 4.70 31.12 0.15 2.94 16 5 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 6 O -0.56 -14.71 10.89 -148.98 -1.62 -16.33 16 7 C -0.19 -6.16 7.36 31.12 0.23 -5.93 16 8 C 0.12 5.09 3.78 45.51 0.17 5.27 16 9 H 0.05 2.27 7.42 -2.39 -0.02 2.26 16 10 N -0.73 -35.46 4.66 -444.32 -2.07 -37.53 16 11 C 0.54 33.08 7.75 86.36 0.67 33.74 16 12 O -0.64 -44.70 14.62 -4.34 -0.06 -44.76 16 13 C -0.57 -34.33 9.54 24.83 0.24 -34.09 16 14 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 15 C 0.03 1.57 5.50 85.31 0.47 2.04 16 16 N -0.82 -52.08 11.83 21.84 0.26 -51.82 16 17 Si 1.00 42.52 29.56 68.60 2.03 44.55 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.05 1.79 5.68 -2.39 -0.01 1.78 16 23 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.43 7.34 -2.38 -0.02 1.41 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.39 6.75 9.12 -74.06 -0.68 6.07 16 28 H 0.11 2.93 7.64 -2.39 -0.02 2.91 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.40 17.81 6.08 -92.71 -0.56 17.24 16 31 H 0.27 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -80.26 258.56 1.55 -78.71 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.09 Total: 31.03 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 3.11 Total: -3.85 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.81 Total: -89.35 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -1.69 Total: -61.09 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -80.26 1.55 -78.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168277961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.348 kcal (2) G-P(sol) polarization free energy of solvation -80.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds