Wall clock time and date at job start Sun Mar 29 2020 22:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99655 * 2 1 4 4 H 1.48493 * 109.47288 * 240.00566 * 3 2 1 5 5 H 1.48505 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46982 * 120.00305 * 3 2 1 7 7 C 1.37872 * 120.00548 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99939 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47441 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00300 * 179.97438 * 10 9 7 12 12 O 1.21512 * 120.00188 * 0.02562 * 11 10 9 13 13 O 1.34634 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.45203 * 117.00173 * 180.02562 * 13 11 10 15 15 C 1.54894 * 110.48415 * 93.24213 * 14 13 11 16 16 C 1.55238 * 102.58338 * 156.67741 * 15 14 13 17 17 C 1.54266 * 104.23333 * 322.08174 * 16 15 14 18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 15 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47806 * 59.99811 * 9 7 2 21 21 H 1.09009 * 109.46871 * 300.00186 * 9 7 2 22 22 H 0.97005 * 119.99921 * 359.97438 * 10 9 7 23 23 H 1.09002 * 110.43256 * 330.70061 * 14 13 11 24 24 H 1.08996 * 110.75388 * 275.06094 * 15 14 13 25 25 H 1.08993 * 110.76071 * 38.44320 * 15 14 13 26 26 H 1.09005 * 110.46917 * 203.39204 * 16 15 14 27 27 H 1.09007 * 110.58541 * 80.83124 * 16 15 14 28 28 H 1.08999 * 110.03060 * 264.32313 * 17 16 15 29 29 H 1.09006 * 110.06829 * 142.91691 * 17 16 15 30 30 H 1.09001 * 110.02983 * 240.71432 * 18 17 16 31 31 H 1.08996 * 110.07773 * 119.30576 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1026 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8832 0.0000 12 8 0.5595 -5.1054 0.0000 13 8 2.6291 -5.9065 -0.0005 14 6 2.0742 -7.2483 -0.0005 15 6 1.9423 -7.7804 -1.4492 16 6 1.9436 -9.3194 -1.2457 17 6 2.9625 -9.5510 -0.1108 18 6 3.0455 -8.2343 0.6809 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5568 -0.8902 21 1 0.6248 -2.5570 0.8897 22 1 3.1570 -3.4353 -0.0009 23 1 1.1058 -7.2597 0.4998 24 1 1.0065 -7.4485 -1.8988 25 1 2.7942 -7.4699 -2.0539 26 1 2.2659 -9.8241 -2.1566 27 1 0.9546 -9.6674 -0.9474 28 1 3.9383 -9.7972 -0.5296 29 1 2.6214 -10.3568 0.5394 30 1 4.0616 -7.8413 0.6464 31 1 2.7445 -8.4000 1.7153 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218718996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:21 Heat of formation + Delta-G solvation = -105.868143 kcal Electronic energy + Delta-G solvation = -13981.796525 eV Core-core repulsion = 11455.341056 eV Total energy + Delta-G solvation = -2526.455469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87794 -37.69588 -35.34414 -34.20535 -32.34908 -28.79630 -28.28010 -26.97441 -23.03967 -21.01273 -20.45969 -20.03618 -18.51840 -16.40465 -16.10094 -15.54045 -15.43481 -14.90071 -14.34295 -13.47432 -13.44400 -12.88333 -12.41963 -12.26846 -11.98031 -11.58071 -11.34081 -11.18467 -10.99723 -10.88588 -10.66180 -10.55018 -10.34368 -10.01090 -9.72680 -9.43968 -8.77397 -7.97643 -6.18579 -4.25855 2.92064 3.26124 3.30723 3.33144 3.61069 4.31402 4.49392 4.54923 4.76143 5.08534 5.17754 5.33397 5.38893 5.40425 5.52298 5.60806 5.77819 5.84437 5.93752 6.08232 6.16618 6.21442 6.88964 7.30923 7.37467 7.46246 7.64544 7.93000 8.56767 8.75908 9.19355 9.41624 10.91629 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.083787 B = 0.005314 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.098594 B = 5267.972704 C = 5411.608752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.265 3.735 10 N -0.691 5.691 11 C 0.631 3.369 12 O -0.585 6.585 13 O -0.373 6.373 14 C 0.102 3.898 15 C -0.142 4.142 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.123 4.123 19 H 0.267 0.733 20 H 0.029 0.971 21 H 0.029 0.971 22 H 0.397 0.603 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -15.004 -0.697 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.146 3.854 10 N -0.347 5.347 11 C 0.383 3.617 12 O -0.476 6.476 13 O -0.288 6.288 14 C 0.045 3.955 15 C -0.179 4.179 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.161 4.161 19 H 0.077 0.923 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.230 0.770 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.675 -15.028 -0.690 16.079 hybrid contribution 0.712 1.011 0.004 1.237 sum 6.387 -14.017 -0.687 15.419 Atomic orbital electron populations 1.69962 1.06126 1.27563 1.48641 1.24934 0.94940 0.99443 0.94577 0.86417 0.79364 0.82030 0.78766 1.19995 1.21033 1.19999 1.21164 0.93442 0.90092 1.53608 0.91666 1.19176 0.87633 0.80518 0.98065 1.45457 1.11964 1.02252 1.75025 1.18409 0.83725 0.82275 0.77294 1.90922 1.15054 1.84430 1.57164 1.86279 1.39816 1.15304 1.87433 1.23441 0.97825 0.77562 0.96640 1.22971 1.03073 0.95240 0.96665 1.22329 0.99555 0.95532 0.98611 1.22074 0.99758 0.96763 0.97206 1.22211 1.00612 0.93992 0.99250 0.92291 0.95253 0.95269 0.76981 0.89133 0.90630 0.90494 0.91246 0.91275 0.91424 0.91487 0.90287 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 8 H 0.07 1.67 7.60 -52.48 -0.40 1.27 16 9 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 10 N -0.69 -15.64 5.55 -66.47 -0.37 -16.01 16 11 C 0.63 14.01 8.75 54.05 0.47 14.48 16 12 O -0.59 -14.72 15.62 -19.28 -0.30 -15.03 16 13 O -0.37 -6.85 10.00 -40.31 -0.40 -7.26 16 14 C 0.10 1.53 3.18 -25.07 -0.08 1.45 16 15 C -0.14 -1.86 6.66 -24.55 -0.16 -2.02 16 16 C -0.12 -1.21 6.84 -24.88 -0.17 -1.38 16 17 C -0.12 -1.10 6.80 -25.62 -0.17 -1.27 16 18 C -0.12 -1.40 6.57 -25.62 -0.17 -1.57 16 19 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 22 H 0.40 7.92 8.43 -40.82 -0.34 7.57 16 23 H 0.09 1.49 7.20 -51.93 -0.37 1.12 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 267.16 15.07 4.03 4.03 Total: -1.00 -31.01 267.16 -6.54 -37.54 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.48 Total: 2.87 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.73 Total: 3.32 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.37 Total: -41.29 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.70 Total: -22.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.01 -6.54 -37.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218718996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.327 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds