Wall clock time and date at job start Sun Mar 29 2020 22:00:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86804 * 119.99655 * 2 1
4 4 H 1.48493 * 109.47288 * 240.00566 * 3 2 1
5 5 H 1.48505 * 109.47259 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46982 * 120.00305 * 3 2 1
7 7 C 1.37872 * 120.00548 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99939 * 359.97438 * 7 2 1
10 10 N 1.46501 * 109.47441 * 180.02562 * 9 7 2
11 11 C 1.34771 * 120.00300 * 179.97438 * 10 9 7
12 12 O 1.21512 * 120.00188 * 0.02562 * 11 10 9
13 13 O 1.34634 * 120.00145 * 179.97438 * 11 10 9
14 14 C 1.45203 * 117.00173 * 180.02562 * 13 11 10
15 15 C 1.54894 * 110.48415 * 93.24213 * 14 13 11
16 16 C 1.55238 * 102.58338 * 156.67741 * 15 14 13
17 17 C 1.54266 * 104.23333 * 322.08174 * 16 15 14
18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 15
19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
20 20 H 1.08996 * 109.47806 * 59.99811 * 9 7 2
21 21 H 1.09009 * 109.46871 * 300.00186 * 9 7 2
22 22 H 0.97005 * 119.99921 * 359.97438 * 10 9 7
23 23 H 1.09002 * 110.43256 * 330.70061 * 14 13 11
24 24 H 1.08996 * 110.75388 * 275.06094 * 15 14 13
25 25 H 1.08993 * 110.76071 * 38.44320 * 15 14 13
26 26 H 1.09005 * 110.46917 * 203.39204 * 16 15 14
27 27 H 1.09007 * 110.58541 * 80.83124 * 16 15 14
28 28 H 1.08999 * 110.03060 * 264.32313 * 17 16 15
29 29 H 1.09006 * 110.06829 * 142.91691 * 17 16 15
30 30 H 1.09001 * 110.02983 * 240.71432 * 18 17 16
31 31 H 1.08996 * 110.07773 * 119.30576 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1026 1.6966 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0046 -1.1939 -0.0005
8 1 3.0847 -1.1938 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 7 2.2032 -3.6126 -0.0005
11 6 1.7541 -4.8832 0.0000
12 8 0.5595 -5.1054 0.0000
13 8 2.6291 -5.9065 -0.0005
14 6 2.0742 -7.2483 -0.0005
15 6 1.9423 -7.7804 -1.4492
16 6 1.9436 -9.3194 -1.2457
17 6 2.9625 -9.5510 -0.1108
18 6 3.0455 -8.2343 0.6809
19 1 -0.4851 0.8400 0.0004
20 1 0.6242 -2.5568 -0.8902
21 1 0.6248 -2.5570 0.8897
22 1 3.1570 -3.4353 -0.0009
23 1 1.1058 -7.2597 0.4998
24 1 1.0065 -7.4485 -1.8988
25 1 2.7942 -7.4699 -2.0539
26 1 2.2659 -9.8241 -2.1566
27 1 0.9546 -9.6674 -0.9474
28 1 3.9383 -9.7972 -0.5296
29 1 2.6214 -10.3568 0.5394
30 1 4.0616 -7.8413 0.6464
31 1 2.7445 -8.4000 1.7153
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000218718996.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:00:21
Heat of formation + Delta-G solvation = -105.868143 kcal
Electronic energy + Delta-G solvation = -13981.796525 eV
Core-core repulsion = 11455.341056 eV
Total energy + Delta-G solvation = -2526.455469 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.87794 -37.69588 -35.34414 -34.20535 -32.34908 -28.79630 -28.28010 -26.97441
-23.03967 -21.01273 -20.45969 -20.03618 -18.51840 -16.40465 -16.10094 -15.54045
-15.43481 -14.90071 -14.34295 -13.47432 -13.44400 -12.88333 -12.41963 -12.26846
-11.98031 -11.58071 -11.34081 -11.18467 -10.99723 -10.88588 -10.66180 -10.55018
-10.34368 -10.01090 -9.72680 -9.43968 -8.77397 -7.97643 -6.18579 -4.25855
2.92064 3.26124 3.30723 3.33144 3.61069 4.31402 4.49392 4.54923
4.76143 5.08534 5.17754 5.33397 5.38893 5.40425 5.52298 5.60806
5.77819 5.84437 5.93752 6.08232 6.16618 6.21442 6.88964 7.30923
7.37467 7.46246 7.64544 7.93000 8.56767 8.75908 9.19355 9.41624
10.91629
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.083787 B = 0.005314 C = 0.005173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 334.098594 B = 5267.972704 C = 5411.608752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.065 3.935
3 Si 0.907 3.093
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.545 4.545
8 H 0.065 0.935
9 C 0.265 3.735
10 N -0.691 5.691
11 C 0.631 3.369
12 O -0.585 6.585
13 O -0.373 6.373
14 C 0.102 3.898
15 C -0.142 4.142
16 C -0.123 4.123
17 C -0.120 4.120
18 C -0.123 4.123
19 H 0.267 0.733
20 H 0.029 0.971
21 H 0.029 0.971
22 H 0.397 0.603
23 H 0.091 0.909
24 H 0.075 0.925
25 H 0.076 0.924
26 H 0.069 0.931
27 H 0.068 0.932
28 H 0.067 0.933
29 H 0.066 0.934
30 H 0.078 0.922
31 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.452 -15.004 -0.697 16.348
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.139 4.139
3 Si 0.734 3.266
4 H -0.200 1.200
5 H -0.210 1.210
6 H -0.200 1.200
7 C -0.583 4.583
8 H 0.083 0.917
9 C 0.146 3.854
10 N -0.347 5.347
11 C 0.383 3.617
12 O -0.476 6.476
13 O -0.288 6.288
14 C 0.045 3.955
15 C -0.179 4.179
16 C -0.160 4.160
17 C -0.158 4.158
18 C -0.161 4.161
19 H 0.077 0.923
20 H 0.047 0.953
21 H 0.047 0.953
22 H 0.230 0.770
23 H 0.109 0.891
24 H 0.094 0.906
25 H 0.095 0.905
26 H 0.088 0.912
27 H 0.087 0.913
28 H 0.086 0.914
29 H 0.085 0.915
30 H 0.097 0.903
31 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 5.675 -15.028 -0.690 16.079
hybrid contribution 0.712 1.011 0.004 1.237
sum 6.387 -14.017 -0.687 15.419
Atomic orbital electron populations
1.69962 1.06126 1.27563 1.48641 1.24934 0.94940 0.99443 0.94577
0.86417 0.79364 0.82030 0.78766 1.19995 1.21033 1.19999 1.21164
0.93442 0.90092 1.53608 0.91666 1.19176 0.87633 0.80518 0.98065
1.45457 1.11964 1.02252 1.75025 1.18409 0.83725 0.82275 0.77294
1.90922 1.15054 1.84430 1.57164 1.86279 1.39816 1.15304 1.87433
1.23441 0.97825 0.77562 0.96640 1.22971 1.03073 0.95240 0.96665
1.22329 0.99555 0.95532 0.98611 1.22074 0.99758 0.96763 0.97206
1.22211 1.00612 0.93992 0.99250 0.92291 0.95253 0.95269 0.76981
0.89133 0.90630 0.90494 0.91246 0.91275 0.91424 0.91487 0.90287
0.90960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16
2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16
3 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16
4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16
7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16
8 H 0.07 1.67 7.60 -52.48 -0.40 1.27 16
9 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16
10 N -0.69 -15.64 5.55 -66.47 -0.37 -16.01 16
11 C 0.63 14.01 8.75 54.05 0.47 14.48 16
12 O -0.59 -14.72 15.62 -19.28 -0.30 -15.03 16
13 O -0.37 -6.85 10.00 -40.31 -0.40 -7.26 16
14 C 0.10 1.53 3.18 -25.07 -0.08 1.45 16
15 C -0.14 -1.86 6.66 -24.55 -0.16 -2.02 16
16 C -0.12 -1.21 6.84 -24.88 -0.17 -1.38 16
17 C -0.12 -1.10 6.80 -25.62 -0.17 -1.27 16
18 C -0.12 -1.40 6.57 -25.62 -0.17 -1.57 16
19 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16
21 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16
22 H 0.40 7.92 8.43 -40.82 -0.34 7.57 16
23 H 0.09 1.49 7.20 -51.93 -0.37 1.12 16
24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16
26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.08 0.89 8.07 -51.93 -0.42 0.48 16
31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 267.16 15.07 4.03 4.03
Total: -1.00 -31.01 267.16 -6.54 -37.54
By element:
Atomic # 1 Polarization: 7.35 SS G_CDS: -4.48 Total: 2.87 kcal
Atomic # 6 Polarization: 4.05 SS G_CDS: -0.73 Total: 3.32 kcal
Atomic # 7 Polarization: -41.66 SS G_CDS: 0.37 Total: -41.29 kcal
Atomic # 8 Polarization: -21.58 SS G_CDS: -0.70 Total: -22.28 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -31.01 -6.54 -37.54 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000218718996.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.327 kcal
(2) G-P(sol) polarization free energy of solvation -31.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.868 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds