Wall clock time and date at job start Sun Mar 29 2020 22:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99655 * 2 1 4 4 H 1.48493 * 109.47288 * 240.00566 * 3 2 1 5 5 H 1.48505 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46982 * 120.00305 * 3 2 1 7 7 C 1.37872 * 120.00548 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99939 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47441 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00300 * 179.97438 * 10 9 7 12 12 O 1.21512 * 120.00188 * 0.02562 * 11 10 9 13 13 O 1.34634 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.45203 * 117.00173 * 180.02562 * 13 11 10 15 15 C 1.54894 * 110.48415 * 93.24213 * 14 13 11 16 16 C 1.55238 * 102.58338 * 156.67741 * 15 14 13 17 17 C 1.54266 * 104.23333 * 322.08174 * 16 15 14 18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 15 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.47806 * 59.99811 * 9 7 2 21 21 H 1.09009 * 109.46871 * 300.00186 * 9 7 2 22 22 H 0.97005 * 119.99921 * 359.97438 * 10 9 7 23 23 H 1.09002 * 110.43256 * 330.70061 * 14 13 11 24 24 H 1.08996 * 110.75388 * 275.06094 * 15 14 13 25 25 H 1.08993 * 110.76071 * 38.44320 * 15 14 13 26 26 H 1.09005 * 110.46917 * 203.39204 * 16 15 14 27 27 H 1.09007 * 110.58541 * 80.83124 * 16 15 14 28 28 H 1.08999 * 110.03060 * 264.32313 * 17 16 15 29 29 H 1.09006 * 110.06829 * 142.91691 * 17 16 15 30 30 H 1.09001 * 110.02983 * 240.71432 * 18 17 16 31 31 H 1.08996 * 110.07773 * 119.30576 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1026 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7541 -4.8832 0.0000 12 8 0.5595 -5.1054 0.0000 13 8 2.6291 -5.9065 -0.0005 14 6 2.0742 -7.2483 -0.0005 15 6 1.9423 -7.7804 -1.4492 16 6 1.9436 -9.3194 -1.2457 17 6 2.9625 -9.5510 -0.1108 18 6 3.0455 -8.2343 0.6809 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5568 -0.8902 21 1 0.6248 -2.5570 0.8897 22 1 3.1570 -3.4353 -0.0009 23 1 1.1058 -7.2597 0.4998 24 1 1.0065 -7.4485 -1.8988 25 1 2.7942 -7.4699 -2.0539 26 1 2.2659 -9.8241 -2.1566 27 1 0.9546 -9.6674 -0.9474 28 1 3.9383 -9.7972 -0.5296 29 1 2.6214 -10.3568 0.5394 30 1 4.0616 -7.8413 0.6464 31 1 2.7445 -8.4000 1.7153 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218718996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:21 Heat of formation + Delta-G solvation = -127.253875 kcal Electronic energy + Delta-G solvation = -13982.723880 eV Core-core repulsion = 11455.341056 eV Total energy + Delta-G solvation = -2527.382824 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52052 -38.99429 -36.82732 -36.19337 -34.42002 -29.84336 -29.70118 -28.59929 -25.05430 -22.60863 -21.57987 -21.19467 -20.30746 -18.26778 -17.77024 -17.20061 -16.81507 -16.49425 -15.77259 -15.15990 -14.73595 -14.31232 -14.16205 -13.89252 -13.44876 -13.08948 -12.92804 -12.67662 -12.26049 -12.15726 -12.08436 -11.78074 -11.69874 -11.53977 -11.39813 -11.23280 -10.82889 -10.01512 -8.30784 -6.47954 1.28350 1.46307 1.49183 1.58107 1.79067 2.38770 3.04539 3.38690 3.54409 3.59724 3.95296 4.25532 4.45069 4.48460 4.51224 4.70608 4.81911 4.87673 5.03223 5.07523 5.16795 5.17909 5.20395 5.34039 5.42773 5.58426 5.58986 5.79167 6.59119 6.72125 7.21036 7.44834 8.81303 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.083787 B = 0.005314 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.098594 B = 5267.972704 C = 5411.608752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.283 3.717 10 N -0.685 5.685 11 C 0.636 3.364 12 O -0.620 6.620 13 O -0.363 6.363 14 C 0.083 3.917 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.117 4.117 19 H 0.271 0.729 20 H -0.004 1.004 21 H -0.004 1.004 22 H 0.412 0.588 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 -15.656 -0.722 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.343 5.343 11 C 0.388 3.612 12 O -0.513 6.513 13 O -0.277 6.277 14 C 0.028 3.972 15 C -0.182 4.182 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.155 4.155 19 H 0.080 0.920 20 H 0.014 0.986 21 H 0.014 0.986 22 H 0.248 0.752 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.892 -15.728 -0.715 17.612 hybrid contribution 0.002 1.104 0.009 1.104 sum 7.895 -14.624 -0.706 16.634 Atomic orbital electron populations 1.70117 1.08224 1.28872 1.49493 1.26036 0.95800 1.03768 0.93585 0.85158 0.77882 0.76362 0.79514 1.18676 1.20883 1.18673 1.21532 0.94452 0.90140 1.53667 0.89703 1.18675 0.87861 0.82398 0.94913 1.45102 1.12086 1.01866 1.75261 1.18426 0.83552 0.82798 0.76384 1.90896 1.16845 1.85084 1.58439 1.86295 1.38712 1.15926 1.86786 1.23974 0.98302 0.76363 0.98606 1.22997 1.02071 0.98003 0.95129 1.22337 1.00346 0.92584 1.00056 1.22094 1.00469 0.95720 0.96791 1.22268 0.99488 0.93907 0.99813 0.92028 0.98623 0.98619 0.75193 0.91123 0.92732 0.90244 0.89181 0.90923 0.89706 0.89494 0.89927 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.44 0.28 -55.33 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.99 42.12 29.54 68.60 2.03 44.15 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.56 -30.70 9.28 25.60 0.24 -30.46 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.19 16 9 C 0.28 15.79 5.43 85.63 0.46 16.26 16 10 N -0.69 -31.56 5.55 -594.62 -3.30 -34.87 16 11 C 0.64 28.87 8.75 129.79 1.14 30.01 16 12 O -0.62 -32.48 15.62 19.80 0.31 -32.17 16 13 O -0.36 -13.31 10.00 -55.44 -0.55 -13.86 16 14 C 0.08 2.47 3.18 31.67 0.10 2.57 16 15 C -0.14 -3.70 6.66 32.01 0.21 -3.49 16 16 C -0.12 -2.00 6.84 31.79 0.22 -1.78 16 17 C -0.11 -1.68 6.80 31.32 0.21 -1.47 16 18 C -0.12 -2.42 6.57 31.32 0.21 -2.21 16 19 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 20 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 21 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 22 H 0.41 16.27 8.43 -92.70 -0.78 15.49 16 23 H 0.07 2.39 7.20 -2.39 -0.02 2.37 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.16 267.16 2.35 -65.81 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.34 Total: 15.92 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 3.25 Total: 10.35 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -3.02 Total: -90.19 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.24 Total: -46.03 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.16 2.35 -65.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218718996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.445 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds