Wall clock time and date at job start Sun Mar 29 2020 22:00:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86804 * 119.99655 * 2 1
4 4 H 1.48493 * 109.47288 * 240.00566 * 3 2 1
5 5 H 1.48505 * 109.47259 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46982 * 120.00305 * 3 2 1
7 7 C 1.37872 * 120.00548 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1
9 9 C 1.50697 * 119.99939 * 359.97438 * 7 2 1
10 10 N 1.46501 * 109.47441 * 180.02562 * 9 7 2
11 11 C 1.34771 * 120.00300 * 179.97438 * 10 9 7
12 12 O 1.21512 * 120.00188 * 0.02562 * 11 10 9
13 13 O 1.34634 * 120.00145 * 179.97438 * 11 10 9
14 14 C 1.45203 * 117.00173 * 180.02562 * 13 11 10
15 15 C 1.54894 * 110.48415 * 93.24213 * 14 13 11
16 16 C 1.55238 * 102.58338 * 156.67741 * 15 14 13
17 17 C 1.54266 * 104.23333 * 322.08174 * 16 15 14
18 18 C 1.53869 * 106.59800 * 23.61579 * 17 16 15
19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
20 20 H 1.08996 * 109.47806 * 59.99811 * 9 7 2
21 21 H 1.09009 * 109.46871 * 300.00186 * 9 7 2
22 22 H 0.97005 * 119.99921 * 359.97438 * 10 9 7
23 23 H 1.09002 * 110.43256 * 330.70061 * 14 13 11
24 24 H 1.08996 * 110.75388 * 275.06094 * 15 14 13
25 25 H 1.08993 * 110.76071 * 38.44320 * 15 14 13
26 26 H 1.09005 * 110.46917 * 203.39204 * 16 15 14
27 27 H 1.09007 * 110.58541 * 80.83124 * 16 15 14
28 28 H 1.08999 * 110.03060 * 264.32313 * 17 16 15
29 29 H 1.09006 * 110.06829 * 142.91691 * 17 16 15
30 30 H 1.09001 * 110.02983 * 240.71432 * 18 17 16
31 31 H 1.08996 * 110.07773 * 119.30576 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1026 1.6966 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1028 1.6965 1.2125
7 6 2.0046 -1.1939 -0.0005
8 1 3.0847 -1.1938 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 7 2.2032 -3.6126 -0.0005
11 6 1.7541 -4.8832 0.0000
12 8 0.5595 -5.1054 0.0000
13 8 2.6291 -5.9065 -0.0005
14 6 2.0742 -7.2483 -0.0005
15 6 1.9423 -7.7804 -1.4492
16 6 1.9436 -9.3194 -1.2457
17 6 2.9625 -9.5510 -0.1108
18 6 3.0455 -8.2343 0.6809
19 1 -0.4851 0.8400 0.0004
20 1 0.6242 -2.5568 -0.8902
21 1 0.6248 -2.5570 0.8897
22 1 3.1570 -3.4353 -0.0009
23 1 1.1058 -7.2597 0.4998
24 1 1.0065 -7.4485 -1.8988
25 1 2.7942 -7.4699 -2.0539
26 1 2.2659 -9.8241 -2.1566
27 1 0.9546 -9.6674 -0.9474
28 1 3.9383 -9.7972 -0.5296
29 1 2.6214 -10.3568 0.5394
30 1 4.0616 -7.8413 0.6464
31 1 2.7445 -8.4000 1.7153
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000218718996.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:00:21
Heat of formation + Delta-G solvation = -127.253875 kcal
Electronic energy + Delta-G solvation = -13982.723880 eV
Core-core repulsion = 11455.341056 eV
Total energy + Delta-G solvation = -2527.382824 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-41.52052 -38.99429 -36.82732 -36.19337 -34.42002 -29.84336 -29.70118 -28.59929
-25.05430 -22.60863 -21.57987 -21.19467 -20.30746 -18.26778 -17.77024 -17.20061
-16.81507 -16.49425 -15.77259 -15.15990 -14.73595 -14.31232 -14.16205 -13.89252
-13.44876 -13.08948 -12.92804 -12.67662 -12.26049 -12.15726 -12.08436 -11.78074
-11.69874 -11.53977 -11.39813 -11.23280 -10.82889 -10.01512 -8.30784 -6.47954
1.28350 1.46307 1.49183 1.58107 1.79067 2.38770 3.04539 3.38690
3.54409 3.59724 3.95296 4.25532 4.45069 4.48460 4.51224 4.70608
4.81911 4.87673 5.03223 5.07523 5.16795 5.17909 5.20395 5.34039
5.42773 5.58426 5.58986 5.79167 6.59119 6.72125 7.21036 7.44834
8.81303
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.083787 B = 0.005314 C = 0.005173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 334.098594 B = 5267.972704 C = 5411.608752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.008 3.992
3 Si 0.988 3.012
4 H -0.262 1.262
5 H -0.283 1.283
6 H -0.262 1.262
7 C -0.560 4.560
8 H 0.085 0.915
9 C 0.283 3.717
10 N -0.685 5.685
11 C 0.636 3.364
12 O -0.620 6.620
13 O -0.363 6.363
14 C 0.083 3.917
15 C -0.144 4.144
16 C -0.116 4.116
17 C -0.113 4.113
18 C -0.117 4.117
19 H 0.271 0.729
20 H -0.004 1.004
21 H -0.004 1.004
22 H 0.412 0.588
23 H 0.071 0.929
24 H 0.054 0.946
25 H 0.079 0.921
26 H 0.090 0.910
27 H 0.072 0.928
28 H 0.084 0.916
29 H 0.086 0.914
30 H 0.082 0.918
31 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.621 -15.656 -0.722 17.887
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.192 4.192
3 Si 0.811 3.189
4 H -0.187 1.187
5 H -0.209 1.209
6 H -0.187 1.187
7 C -0.598 4.598
8 H 0.103 0.897
9 C 0.162 3.838
10 N -0.343 5.343
11 C 0.388 3.612
12 O -0.513 6.513
13 O -0.277 6.277
14 C 0.028 3.972
15 C -0.182 4.182
16 C -0.153 4.153
17 C -0.151 4.151
18 C -0.155 4.155
19 H 0.080 0.920
20 H 0.014 0.986
21 H 0.014 0.986
22 H 0.248 0.752
23 H 0.089 0.911
24 H 0.073 0.927
25 H 0.098 0.902
26 H 0.108 0.892
27 H 0.091 0.909
28 H 0.103 0.897
29 H 0.105 0.895
30 H 0.101 0.899
31 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 7.892 -15.728 -0.715 17.612
hybrid contribution 0.002 1.104 0.009 1.104
sum 7.895 -14.624 -0.706 16.634
Atomic orbital electron populations
1.70117 1.08224 1.28872 1.49493 1.26036 0.95800 1.03768 0.93585
0.85158 0.77882 0.76362 0.79514 1.18676 1.20883 1.18673 1.21532
0.94452 0.90140 1.53667 0.89703 1.18675 0.87861 0.82398 0.94913
1.45102 1.12086 1.01866 1.75261 1.18426 0.83552 0.82798 0.76384
1.90896 1.16845 1.85084 1.58439 1.86295 1.38712 1.15926 1.86786
1.23974 0.98302 0.76363 0.98606 1.22997 1.02071 0.98003 0.95129
1.22337 1.00346 0.92584 1.00056 1.22094 1.00469 0.95720 0.96791
1.22268 0.99488 0.93907 0.99813 0.92028 0.98623 0.98619 0.75193
0.91123 0.92732 0.90244 0.89181 0.90923 0.89706 0.89494 0.89927
0.90048
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.61 13.29 21.44 0.28 -55.33 16
2 C 0.01 0.45 5.46 84.65 0.46 0.91 16
3 Si 0.99 42.12 29.54 68.60 2.03 44.15 16
4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16
6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
7 C -0.56 -30.70 9.28 25.60 0.24 -30.46 16
8 H 0.08 4.22 7.60 -2.91 -0.02 4.19 16
9 C 0.28 15.79 5.43 85.63 0.46 16.26 16
10 N -0.69 -31.56 5.55 -594.62 -3.30 -34.87 16
11 C 0.64 28.87 8.75 129.79 1.14 30.01 16
12 O -0.62 -32.48 15.62 19.80 0.31 -32.17 16
13 O -0.36 -13.31 10.00 -55.44 -0.55 -13.86 16
14 C 0.08 2.47 3.18 31.67 0.10 2.57 16
15 C -0.14 -3.70 6.66 32.01 0.21 -3.49 16
16 C -0.12 -2.00 6.84 31.79 0.22 -1.78 16
17 C -0.11 -1.68 6.80 31.32 0.21 -1.47 16
18 C -0.12 -2.42 6.57 31.32 0.21 -2.21 16
19 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16
20 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16
21 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16
22 H 0.41 16.27 8.43 -92.70 -0.78 15.49 16
23 H 0.07 2.39 7.20 -2.39 -0.02 2.37 16
24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
26 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16
27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16
30 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16
31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
Total: -1.00 -68.16 267.16 2.35 -65.81
By element:
Atomic # 1 Polarization: 15.58 SS G_CDS: 0.34 Total: 15.92 kcal
Atomic # 6 Polarization: 7.10 SS G_CDS: 3.25 Total: 10.35 kcal
Atomic # 7 Polarization: -87.17 SS G_CDS: -3.02 Total: -90.19 kcal
Atomic # 8 Polarization: -45.79 SS G_CDS: -0.24 Total: -46.03 kcal
Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal
Total: -68.16 2.35 -65.81 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000218718996.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.445 kcal
(2) G-P(sol) polarization free energy of solvation -68.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds