Wall clock time and date at job start Sun Mar 29 2020 21:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47586 * 2 1 4 4 C 1.53004 * 109.47237 * 120.00413 * 2 1 3 5 5 N 1.46895 * 109.47035 * 174.99958 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99876 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99989 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99944 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47454 * 59.99696 * 11 9 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46926 * 299.99488 * 11 9 7 15 15 N 1.46899 * 109.47368 * 240.00386 * 2 1 3 16 16 C 1.46905 * 110.99881 * 306.04818 * 15 2 1 17 17 C 1.46906 * 110.99941 * 69.99717 * 15 2 1 18 18 C 1.53000 * 117.49686 * 243.74720 * 17 15 2 19 19 C 1.53002 * 117.49507 * 175.09097 * 17 15 2 20 20 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47213 * 299.99995 * 1 2 3 22 22 H 1.09007 * 109.47274 * 59.99597 * 1 2 3 23 23 H 1.08996 * 109.46863 * 54.99800 * 4 2 1 24 24 H 1.09002 * 109.46661 * 294.99977 * 4 2 1 25 25 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 26 26 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 27 27 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 28 28 H 0.96997 * 119.99752 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.47026 * 59.99919 * 16 15 2 30 30 H 1.08994 * 109.47325 * 179.97438 * 16 15 2 31 31 H 1.08999 * 109.46978 * 299.99967 * 16 15 2 32 32 H 1.09000 * 115.54939 * 29.42432 * 17 15 2 33 33 H 1.08997 * 117.50289 * 0.02562 * 18 17 15 34 34 H 1.09006 * 117.49313 * 145.02715 * 18 17 15 35 35 H 1.09006 * 117.49229 * 214.97988 * 19 17 15 36 36 H 1.09000 * 117.50287 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5039 -0.8267 1.1903 6 6 4.0303 -1.5150 2.3766 7 6 5.5316 -1.6046 2.2806 8 1 6.0435 -1.1912 1.4241 9 6 6.2515 -2.2143 3.2860 10 7 5.6281 -2.7173 4.3291 11 14 8.1125 -2.3247 3.1673 12 1 8.6859 -0.9569 3.0942 13 1 8.6446 -3.0206 4.3665 14 1 8.4864 -3.0841 1.9472 15 7 2.0196 -0.6924 -1.1995 16 6 1.4342 -2.0354 -1.3079 17 6 1.7528 0.0974 -2.4091 18 6 0.8024 -0.5010 -3.4481 19 6 2.3046 -0.4320 -3.7343 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -1.7198 1.2950 24 1 1.7516 -0.1584 2.1369 25 1 3.7995 -1.2884 0.3432 26 1 3.7559 -0.9573 3.2719 27 1 3.6095 -2.5191 2.4308 28 1 6.1347 -3.1459 5.0366 29 1 0.3489 -1.9548 -1.3695 30 1 1.8132 -2.5256 -2.2046 31 1 1.7058 -2.6221 -0.4304 32 1 1.7299 1.1782 -2.2693 33 1 0.3748 -1.4804 -3.2340 34 1 0.1545 0.1862 -3.9922 35 1 2.6442 0.3006 -4.4665 36 1 2.8659 -1.3660 -3.7086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:22 Heat of formation + Delta-G solvation = 32.765576 kcal Electronic energy + Delta-G solvation = -14440.235550 eV Core-core repulsion = 12153.343446 eV Total energy + Delta-G solvation = -2286.892104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29322 -35.96076 -33.80357 -31.99967 -29.92317 -27.10169 -26.44487 -24.17816 -22.33149 -21.24147 -20.94337 -19.18384 -16.85358 -16.35629 -15.26241 -14.87484 -14.62633 -14.21336 -13.78010 -13.23027 -12.85038 -12.37387 -12.29576 -11.96769 -11.80369 -11.61914 -11.31859 -11.20742 -10.97421 -10.80328 -10.65781 -10.54180 -10.41311 -10.17321 -9.73794 -9.09284 -8.39523 -7.92983 -7.07719 -5.95410 -3.96451 3.39241 3.42227 3.46222 3.73363 4.10493 4.49962 4.84537 4.92875 5.01027 5.11391 5.24166 5.36484 5.40378 5.49395 5.60345 5.61333 5.80499 5.84942 5.88079 5.93002 5.99750 6.09457 6.12999 6.20751 6.35806 6.49526 7.23414 7.29051 7.37709 7.54833 7.89295 8.24264 8.60740 8.81329 9.14516 9.68197 11.15879 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042358 B = 0.006354 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.869016 B = 4405.464994 C = 4816.888010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 H 0.088 0.912 4 C 0.069 3.931 5 N -0.684 5.684 6 C 0.193 3.807 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.899 3.101 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 N -0.494 5.494 16 C 0.014 3.986 17 C 0.032 3.968 18 C -0.224 4.224 19 C -0.173 4.173 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.015 0.985 24 H 0.065 0.935 25 H 0.341 0.659 26 H 0.024 0.976 27 H -0.018 1.018 28 H 0.261 0.739 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 3.832 -12.571 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.024 4.024 3 H 0.106 0.894 4 C -0.061 4.061 5 N -0.315 5.315 6 C 0.066 3.934 7 C -0.548 4.548 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.727 3.273 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 N -0.215 5.215 16 C -0.134 4.134 17 C -0.078 4.078 18 C -0.264 4.264 19 C -0.211 4.211 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.083 0.917 25 H 0.159 0.841 26 H 0.042 0.958 27 H 0.000 1.000 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.043 4.303 -12.048 16.264 hybrid contribution -0.179 -1.000 -0.215 1.038 sum -10.221 3.303 -12.263 16.302 Atomic orbital electron populations 1.22453 0.97800 1.02019 1.01901 1.21870 0.91673 0.98996 0.89853 0.89408 1.21893 0.91640 0.97276 0.95338 1.60538 1.05650 1.58365 1.06979 1.19536 0.94769 0.91036 0.88021 1.21184 0.91683 1.36174 1.05789 0.92000 1.24991 0.98747 0.95584 0.95341 1.69962 1.35673 1.39061 1.09368 0.86550 0.85335 0.78220 0.77210 1.20183 1.21431 1.20301 1.61943 1.56767 1.02036 1.00780 1.22565 0.97213 0.90896 1.02695 1.22598 1.01732 0.97109 0.86369 1.23552 0.93501 1.03454 1.05846 1.23042 0.95489 1.03578 0.98961 0.92450 0.92060 0.92750 0.96733 0.91665 0.84100 0.95771 1.00040 0.92990 0.94894 0.91689 0.90955 0.86760 0.88486 0.89357 0.88809 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 8.49 37.15 0.32 -1.87 16 2 C 0.08 1.24 2.59 -67.72 -0.18 1.06 16 3 H 0.09 1.33 7.96 -51.93 -0.41 0.92 16 4 C 0.07 1.27 4.90 -3.82 -0.02 1.25 16 5 N -0.68 -15.41 6.48 -115.06 -0.75 -16.16 16 6 C 0.19 5.27 5.44 -4.97 -0.03 5.25 16 7 C -0.51 -14.97 9.32 -34.44 -0.32 -15.29 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 11 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 N -0.49 -7.04 3.99 -226.90 -0.91 -7.95 16 16 C 0.01 0.19 7.41 60.07 0.45 0.63 16 17 C 0.03 0.38 5.20 -67.71 -0.35 0.03 16 18 C -0.22 -2.29 9.51 -26.69 -0.25 -2.55 16 19 C -0.17 -1.90 9.99 -26.69 -0.27 -2.16 16 20 H 0.06 0.69 6.33 -51.93 -0.33 0.36 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.59 7.52 -51.92 -0.39 0.20 16 23 H 0.01 0.27 6.80 -51.93 -0.35 -0.08 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.34 7.64 7.87 -39.29 -0.31 7.33 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 27 H -0.02 -0.52 8.14 -51.93 -0.42 -0.95 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.03 0.39 5.30 -51.93 -0.28 0.11 16 30 H 0.06 0.80 6.63 -51.93 -0.34 0.45 16 31 H 0.07 1.08 6.58 -51.93 -0.34 0.73 16 32 H 0.11 1.32 7.93 -51.93 -0.41 0.91 16 33 H 0.10 1.00 5.89 -51.93 -0.31 0.69 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.13 7.56 -51.93 -0.39 0.73 16 LS Contribution 284.25 15.07 4.28 4.28 Total: -1.00 -30.37 284.25 -8.35 -38.72 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.95 Total: 2.87 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.75 Total: -12.16 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.91 Total: -50.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.37 -8.35 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.487 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds