Wall clock time and date at job start Sun Mar 29 2020 21:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47586 * 2 1 4 4 C 1.53004 * 109.47237 * 120.00413 * 2 1 3 5 5 N 1.46895 * 109.47035 * 174.99958 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99876 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99989 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99944 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47454 * 59.99696 * 11 9 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46926 * 299.99488 * 11 9 7 15 15 N 1.46899 * 109.47368 * 240.00386 * 2 1 3 16 16 C 1.46905 * 110.99881 * 306.04818 * 15 2 1 17 17 C 1.46906 * 110.99941 * 69.99717 * 15 2 1 18 18 C 1.53000 * 117.49686 * 243.74720 * 17 15 2 19 19 C 1.53002 * 117.49507 * 175.09097 * 17 15 2 20 20 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47213 * 299.99995 * 1 2 3 22 22 H 1.09007 * 109.47274 * 59.99597 * 1 2 3 23 23 H 1.08996 * 109.46863 * 54.99800 * 4 2 1 24 24 H 1.09002 * 109.46661 * 294.99977 * 4 2 1 25 25 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 26 26 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 27 27 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 28 28 H 0.96997 * 119.99752 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.47026 * 59.99919 * 16 15 2 30 30 H 1.08994 * 109.47325 * 179.97438 * 16 15 2 31 31 H 1.08999 * 109.46978 * 299.99967 * 16 15 2 32 32 H 1.09000 * 115.54939 * 29.42432 * 17 15 2 33 33 H 1.08997 * 117.50289 * 0.02562 * 18 17 15 34 34 H 1.09006 * 117.49313 * 145.02715 * 18 17 15 35 35 H 1.09006 * 117.49229 * 214.97988 * 19 17 15 36 36 H 1.09000 * 117.50287 * 359.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5039 -0.8267 1.1903 6 6 4.0303 -1.5150 2.3766 7 6 5.5316 -1.6046 2.2806 8 1 6.0435 -1.1912 1.4241 9 6 6.2515 -2.2143 3.2860 10 7 5.6281 -2.7173 4.3291 11 14 8.1125 -2.3247 3.1673 12 1 8.6859 -0.9569 3.0942 13 1 8.6446 -3.0206 4.3665 14 1 8.4864 -3.0841 1.9472 15 7 2.0196 -0.6924 -1.1995 16 6 1.4342 -2.0354 -1.3079 17 6 1.7528 0.0974 -2.4091 18 6 0.8024 -0.5010 -3.4481 19 6 2.3046 -0.4320 -3.7343 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -1.7198 1.2950 24 1 1.7516 -0.1584 2.1369 25 1 3.7995 -1.2884 0.3432 26 1 3.7559 -0.9573 3.2719 27 1 3.6095 -2.5191 2.4308 28 1 6.1347 -3.1459 5.0366 29 1 0.3489 -1.9548 -1.3695 30 1 1.8132 -2.5256 -2.2046 31 1 1.7058 -2.6221 -0.4304 32 1 1.7299 1.1782 -2.2693 33 1 0.3748 -1.4804 -3.2340 34 1 0.1545 0.1862 -3.9922 35 1 2.6442 0.3006 -4.4665 36 1 2.8659 -1.3660 -3.7086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:22 Heat of formation + Delta-G solvation = 11.655965 kcal Electronic energy + Delta-G solvation = -14441.150931 eV Core-core repulsion = 12153.343446 eV Total energy + Delta-G solvation = -2287.807485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35187 -37.36611 -35.50616 -33.96194 -31.09623 -29.00836 -27.48032 -25.91731 -23.28340 -23.14506 -22.10740 -20.29452 -18.53357 -17.92040 -16.73476 -16.42631 -16.00702 -15.64166 -15.21010 -14.68912 -14.29271 -14.05736 -13.55162 -13.22252 -13.15779 -12.92586 -12.81268 -12.62594 -12.56560 -12.29680 -12.15072 -11.92577 -11.71511 -11.53259 -11.26692 -11.05157 -10.64038 -9.05689 -8.88155 -8.20954 -6.32144 1.41444 1.45760 1.53749 2.41639 2.77317 3.11796 3.16689 3.60078 3.99154 4.05006 4.11157 4.21246 4.27950 4.35460 4.41585 4.60082 4.68223 4.74367 4.81811 4.85652 4.93565 5.02480 5.08415 5.15105 5.16627 5.29842 5.30780 5.31618 5.63720 6.05130 6.17658 6.24969 6.55449 6.79837 6.98318 7.39074 8.90628 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042358 B = 0.006354 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.869016 B = 4405.464994 C = 4816.888010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.094 3.906 3 H 0.084 0.916 4 C 0.068 3.932 5 N -0.681 5.681 6 C 0.208 3.792 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.975 3.025 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.267 1.267 15 N -0.515 5.515 16 C 0.019 3.981 17 C 0.015 3.985 18 C -0.205 4.205 19 C -0.175 4.175 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.012 0.988 24 H 0.060 0.940 25 H 0.342 0.658 26 H -0.003 1.003 27 H -0.046 1.046 28 H 0.265 0.735 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.717 4.399 -14.107 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 H 0.102 0.898 4 C -0.062 4.062 5 N -0.312 5.312 6 C 0.080 3.920 7 C -0.573 4.573 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.799 3.201 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.191 1.191 15 N -0.237 5.237 16 C -0.129 4.129 17 C -0.094 4.094 18 C -0.244 4.244 19 C -0.213 4.213 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.160 0.840 26 H 0.015 0.985 27 H -0.028 1.028 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.063 4.880 -13.608 17.615 hybrid contribution -0.231 -1.173 0.250 1.222 sum -10.295 3.707 -13.358 17.268 Atomic orbital electron populations 1.22342 0.95311 1.02400 1.03078 1.21669 0.93468 0.97922 0.88379 0.89806 1.21994 0.88968 0.97634 0.97582 1.60437 1.08522 1.57056 1.05210 1.19196 0.94389 0.89445 0.88937 1.21520 0.92759 1.36840 1.06199 0.91986 1.25973 1.04381 0.94720 0.94664 1.70093 1.37925 1.39456 1.10110 0.85364 0.78417 0.78647 0.77721 1.19286 1.20613 1.19143 1.61864 1.57678 1.02633 1.01518 1.22503 0.98210 0.90316 1.01841 1.22652 1.03788 0.97201 0.85801 1.23562 0.93148 1.03533 1.04135 1.23099 0.96266 1.03399 0.98515 0.92420 0.91445 0.90991 0.97018 0.92160 0.83959 0.98486 1.02799 0.92623 0.93247 0.90951 0.93395 0.86202 0.88457 0.87567 0.87411 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 8.49 71.98 0.61 -3.16 16 2 C 0.09 2.68 2.59 44.91 0.12 2.79 16 3 H 0.08 2.46 7.96 -2.39 -0.02 2.44 16 4 C 0.07 2.54 4.90 86.31 0.42 2.96 16 5 N -0.68 -31.42 6.48 -517.92 -3.36 -34.78 16 6 C 0.21 11.80 5.44 85.56 0.47 12.27 16 7 C -0.54 -31.95 9.32 25.60 0.24 -31.71 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 11 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 N -0.52 -14.18 3.99 -871.78 -3.48 -17.66 16 16 C 0.02 0.48 7.41 127.69 0.95 1.43 16 17 C 0.01 0.32 5.20 44.92 0.23 0.56 16 18 C -0.20 -3.60 9.51 30.62 0.29 -3.30 16 19 C -0.17 -3.48 9.99 30.62 0.31 -3.17 16 20 H 0.06 1.27 6.33 -2.39 -0.02 1.25 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 1.35 7.52 -2.38 -0.02 1.34 16 23 H 0.01 0.45 6.80 -2.39 -0.02 0.43 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.34 15.63 7.87 -89.69 -0.71 14.92 16 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H -0.05 -2.77 8.14 -2.38 -0.02 -2.79 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.05 1.08 5.30 -2.39 -0.01 1.07 16 30 H 0.07 1.71 6.63 -2.39 -0.02 1.69 16 31 H 0.05 1.44 6.58 -2.39 -0.02 1.42 16 32 H 0.12 2.50 7.93 -2.39 -0.02 2.48 16 33 H 0.10 1.72 5.89 -2.39 -0.01 1.71 16 34 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 1.89 7.56 -2.39 -0.02 1.87 16 Total: -1.00 -65.29 284.25 -0.09 -65.38 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.34 Total: 18.18 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.09 Total: -20.85 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.55 Total: -110.29 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.29 -0.09 -65.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.039 kcal (2) G-P(sol) polarization free energy of solvation -65.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds