Wall clock time and date at job start Sun Mar 29 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46898 * 109.47552 * 185.00272 * 4 2 1 6 6 C 1.46897 * 111.00002 * 180.02562 * 5 4 2 7 7 C 1.50711 * 109.47169 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99467 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99937 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00638 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99898 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46852 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47200 * 119.99917 * 11 9 7 14 14 H 1.48497 * 109.47127 * 239.99859 * 11 9 7 15 15 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 16 16 C 1.46903 * 111.00066 * 58.94896 * 15 2 1 17 17 C 1.46906 * 110.99440 * 294.99743 * 15 2 1 18 18 C 1.52991 * 117.49697 * 248.74355 * 17 15 2 19 19 C 1.53004 * 117.49373 * 180.08289 * 17 15 2 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 24 24 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 25 25 H 1.00899 * 110.99931 * 56.04384 * 5 4 2 26 26 H 1.08992 * 109.47483 * 299.99823 * 6 5 4 27 27 H 1.08998 * 109.47598 * 60.00204 * 6 5 4 28 28 H 0.96993 * 120.00292 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.46799 * 60.00373 * 16 15 2 30 30 H 1.08995 * 109.46967 * 180.02562 * 16 15 2 31 31 H 1.09002 * 109.46933 * 300.00619 * 16 15 2 32 32 H 1.08992 * 115.55008 * 34.42043 * 17 15 2 33 33 H 1.08998 * 117.50509 * 0.02562 * 18 17 15 34 34 H 1.09004 * 117.49826 * 145.02733 * 18 17 15 35 35 H 1.08999 * 117.49860 * 214.97758 * 19 17 15 36 36 H 1.08998 * 117.50341 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0303 -1.5150 -2.3766 7 6 5.5318 -1.6036 -2.2812 8 1 6.0438 -1.1896 -1.4251 9 6 6.2516 -2.2131 -3.2868 10 7 5.6282 -2.7168 -4.3295 11 14 8.1127 -2.3235 -3.1681 12 1 8.5668 -1.6864 -1.9060 13 1 8.5256 -3.7499 -3.1785 14 1 8.7249 -1.6226 -4.3253 15 7 2.0197 -0.6926 1.1994 16 6 1.5283 -2.0762 1.2460 17 6 1.6487 0.0392 2.4181 18 6 2.7744 0.7025 3.2140 19 6 2.0882 -0.5527 3.7588 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -1.7198 -1.2952 24 1 1.7517 -0.1584 -2.1369 25 1 3.7995 -1.2884 -0.3432 26 1 3.6095 -2.5190 -2.4308 27 1 3.7559 -0.9573 -3.2720 28 1 6.1348 -3.1452 -5.0371 29 1 1.8762 -2.6151 0.3647 30 1 1.9053 -2.5656 2.1440 31 1 0.4384 -2.0742 1.2639 32 1 0.6868 0.5506 2.3848 33 1 3.7903 0.5964 2.8333 34 1 2.5530 1.6503 3.7048 35 1 1.4156 -0.4302 4.6077 36 1 2.6529 -1.4848 3.7366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:25 Heat of formation + Delta-G solvation = 30.355053 kcal Electronic energy + Delta-G solvation = -14431.265580 eV Core-core repulsion = 12144.268949 eV Total energy + Delta-G solvation = -2286.996632 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97384 -35.95410 -33.90720 -32.05192 -30.10041 -27.15208 -25.94396 -24.26677 -22.20187 -21.31453 -21.04249 -19.12608 -16.74885 -16.36445 -15.22208 -14.72690 -14.57522 -14.20814 -13.92451 -13.16642 -13.01268 -12.54383 -12.30821 -12.02514 -11.77873 -11.50905 -11.24000 -11.21640 -10.93224 -10.78876 -10.54952 -10.38293 -10.27800 -10.04243 -9.76304 -9.07526 -8.41027 -8.04019 -7.08330 -5.96305 -3.97249 3.35593 3.42477 3.48623 3.84889 3.95283 4.49408 4.93473 4.98458 5.08095 5.21932 5.29041 5.38205 5.39695 5.51151 5.66024 5.69377 5.75169 5.85018 5.90976 5.96712 6.02888 6.13490 6.23139 6.30631 6.35757 6.52848 7.27675 7.33389 7.37824 7.54064 7.89113 8.23496 8.59999 8.80559 9.14263 9.67601 11.15068 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037220 B = 0.006658 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.096894 B = 4204.631896 C = 4662.263107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.088 0.912 4 C 0.068 3.932 5 N -0.683 5.683 6 C 0.192 3.808 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 N -0.499 5.499 16 C 0.019 3.981 17 C 0.006 3.994 18 C -0.163 4.163 19 C -0.179 4.179 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.015 0.985 24 H 0.065 0.935 25 H 0.340 0.660 26 H -0.018 1.018 27 H 0.024 0.976 28 H 0.259 0.741 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 3.994 12.740 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.022 4.022 3 H 0.106 0.894 4 C -0.062 4.062 5 N -0.315 5.315 6 C 0.065 3.935 7 C -0.546 4.546 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.726 3.274 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.211 1.211 15 N -0.222 5.222 16 C -0.129 4.129 17 C -0.103 4.103 18 C -0.201 4.201 19 C -0.217 4.217 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.033 0.967 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.000 1.000 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.400 4.503 12.272 16.101 hybrid contribution -0.229 -1.048 0.069 1.075 sum -9.629 3.455 12.341 16.030 Atomic orbital electron populations 1.22448 0.98167 1.01978 1.01860 1.21801 0.91424 0.99199 0.89777 0.89369 1.21907 0.91625 0.97285 0.95408 1.60531 1.05665 1.58353 1.06925 1.19549 0.94814 0.91048 0.88041 1.21256 0.91660 1.35955 1.05777 0.91902 1.24995 0.98762 0.95611 0.95357 1.69978 1.35480 1.39180 1.09414 0.86445 0.85435 0.77505 0.78052 1.19631 1.21179 1.21058 1.61927 1.58350 1.01576 1.00355 1.22448 0.97659 0.89995 1.02756 1.22431 0.97121 1.02317 0.88446 1.23063 0.98850 0.95683 1.02458 1.23041 1.04120 0.98704 0.95819 0.91937 0.92853 0.92455 0.96673 0.91679 0.84175 1.00020 0.95752 0.93094 0.90973 0.91693 0.95584 0.89510 0.87786 0.89257 0.89236 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 8.58 37.16 0.32 -1.93 16 2 C 0.09 1.29 2.66 -67.71 -0.18 1.11 16 3 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 4 C 0.07 1.26 4.75 -3.83 -0.02 1.24 16 5 N -0.68 -15.40 6.48 -115.06 -0.75 -16.15 16 6 C 0.19 5.24 5.44 -4.97 -0.03 5.22 16 7 C -0.51 -14.89 9.32 -34.44 -0.32 -15.22 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 11 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 N -0.50 -7.20 3.97 -226.90 -0.90 -8.10 16 16 C 0.02 0.26 8.64 60.07 0.52 0.78 16 17 C 0.01 0.07 5.03 -67.71 -0.34 -0.27 16 18 C -0.16 -1.89 10.46 -26.70 -0.28 -2.17 16 19 C -0.18 -1.93 9.73 -26.69 -0.26 -2.19 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 22 H 0.06 0.70 6.38 -51.93 -0.33 0.36 16 23 H 0.02 0.28 6.70 -51.93 -0.35 -0.06 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.34 7.60 7.83 -39.29 -0.31 7.29 16 26 H -0.02 -0.52 8.14 -51.93 -0.42 -0.94 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.07 1.11 6.44 -51.93 -0.33 0.78 16 30 H 0.06 0.81 6.76 -51.93 -0.35 0.46 16 31 H 0.03 0.32 6.28 -51.93 -0.33 -0.01 16 32 H 0.09 1.00 6.27 -51.93 -0.33 0.67 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.11 7.26 -51.93 -0.38 0.73 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -30.38 286.18 -8.26 -38.64 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.96 Total: 2.88 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.69 Total: -11.96 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.91 Total: -51.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.38 -8.26 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.994 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds