Wall clock time and date at job start Sun Mar 29 2020 21:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46898 * 109.47552 * 185.00272 * 4 2 1 6 6 C 1.46897 * 111.00002 * 180.02562 * 5 4 2 7 7 C 1.50711 * 109.47169 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99467 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99937 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00638 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99898 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46852 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47200 * 119.99917 * 11 9 7 14 14 H 1.48497 * 109.47127 * 239.99859 * 11 9 7 15 15 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 16 16 C 1.46903 * 111.00066 * 58.94896 * 15 2 1 17 17 C 1.46906 * 110.99440 * 294.99743 * 15 2 1 18 18 C 1.52991 * 117.49697 * 248.74355 * 17 15 2 19 19 C 1.53004 * 117.49373 * 180.08289 * 17 15 2 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 24 24 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 25 25 H 1.00899 * 110.99931 * 56.04384 * 5 4 2 26 26 H 1.08992 * 109.47483 * 299.99823 * 6 5 4 27 27 H 1.08998 * 109.47598 * 60.00204 * 6 5 4 28 28 H 0.96993 * 120.00292 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.46799 * 60.00373 * 16 15 2 30 30 H 1.08995 * 109.46967 * 180.02562 * 16 15 2 31 31 H 1.09002 * 109.46933 * 300.00619 * 16 15 2 32 32 H 1.08992 * 115.55008 * 34.42043 * 17 15 2 33 33 H 1.08998 * 117.50509 * 0.02562 * 18 17 15 34 34 H 1.09004 * 117.49826 * 145.02733 * 18 17 15 35 35 H 1.08999 * 117.49860 * 214.97758 * 19 17 15 36 36 H 1.08998 * 117.50341 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0303 -1.5150 -2.3766 7 6 5.5318 -1.6036 -2.2812 8 1 6.0438 -1.1896 -1.4251 9 6 6.2516 -2.2131 -3.2868 10 7 5.6282 -2.7168 -4.3295 11 14 8.1127 -2.3235 -3.1681 12 1 8.5668 -1.6864 -1.9060 13 1 8.5256 -3.7499 -3.1785 14 1 8.7249 -1.6226 -4.3253 15 7 2.0197 -0.6926 1.1994 16 6 1.5283 -2.0762 1.2460 17 6 1.6487 0.0392 2.4181 18 6 2.7744 0.7025 3.2140 19 6 2.0882 -0.5527 3.7588 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -1.7198 -1.2952 24 1 1.7517 -0.1584 -2.1369 25 1 3.7995 -1.2884 -0.3432 26 1 3.6095 -2.5190 -2.4308 27 1 3.7559 -0.9573 -3.2720 28 1 6.1348 -3.1452 -5.0371 29 1 1.8762 -2.6151 0.3647 30 1 1.9053 -2.5656 2.1440 31 1 0.4384 -2.0742 1.2639 32 1 0.6868 0.5506 2.3848 33 1 3.7903 0.5964 2.8333 34 1 2.5530 1.6503 3.7048 35 1 1.4156 -0.4302 4.6077 36 1 2.6529 -1.4848 3.7366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:24 Heat of formation + Delta-G solvation = 9.291535 kcal Electronic energy + Delta-G solvation = -14432.178963 eV Core-core repulsion = 12144.268949 eV Total energy + Delta-G solvation = -2287.910014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08989 -37.31496 -35.61163 -34.04575 -31.30644 -29.06324 -27.00760 -26.00925 -23.31277 -23.08178 -22.27242 -20.26710 -18.54200 -17.84433 -16.78784 -16.41642 -15.87924 -15.54774 -15.25258 -14.76973 -14.45119 -13.97074 -13.79230 -13.34284 -13.13535 -13.05614 -12.79242 -12.63738 -12.43747 -12.30304 -12.11975 -11.93887 -11.63245 -11.29706 -11.15785 -10.98089 -10.66077 -9.13825 -8.96497 -8.22011 -6.33044 1.40808 1.41759 1.56256 2.40829 2.87425 2.97071 3.10889 3.59560 4.01940 4.10107 4.14818 4.26747 4.30784 4.38546 4.41396 4.62968 4.67813 4.75411 4.81123 4.84468 4.88223 5.03721 5.08195 5.13455 5.21626 5.29711 5.32492 5.39776 5.63386 6.04337 6.16467 6.29842 6.54465 6.79276 6.97275 7.38313 8.90018 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037220 B = 0.006658 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.096894 B = 4204.631896 C = 4662.263107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.080 0.920 4 C 0.068 3.932 5 N -0.681 5.681 6 C 0.208 3.792 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.277 1.277 15 N -0.519 5.519 16 C 0.024 3.976 17 C -0.005 4.005 18 C -0.168 4.168 19 C -0.164 4.164 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.014 0.986 24 H 0.059 0.941 25 H 0.341 0.659 26 H -0.045 1.045 27 H -0.003 1.003 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 4.487 14.326 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.013 4.013 3 H 0.099 0.901 4 C -0.062 4.062 5 N -0.312 5.312 6 C 0.080 3.920 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 N -0.243 5.243 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.206 4.206 19 C -0.202 4.202 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.160 0.840 26 H -0.027 1.027 27 H 0.015 0.985 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.501 5.005 13.875 17.546 hybrid contribution -0.247 -1.198 -0.417 1.292 sum -9.748 3.807 13.459 17.049 Atomic orbital electron populations 1.22345 0.95536 1.02440 1.03147 1.21592 0.93335 0.97949 0.88402 0.90150 1.22001 0.88999 0.97677 0.97544 1.60432 1.08505 1.57081 1.05197 1.19205 0.94420 0.89478 0.88915 1.21567 0.92721 1.36631 1.06142 0.92030 1.25974 1.04384 0.94758 0.94688 1.70101 1.37783 1.39561 1.10171 0.85262 0.78507 0.77942 0.78442 1.18759 1.20160 1.20207 1.61836 1.59253 1.02087 1.01086 1.22380 0.98550 0.89488 1.01964 1.22528 0.97862 1.02939 0.87978 1.23082 0.97564 0.97188 1.02761 1.23096 1.03663 0.97801 0.95611 0.91316 0.90905 0.92361 0.96827 0.92215 0.84002 1.02706 0.98496 0.92615 0.93567 0.90698 0.94048 0.88054 0.90040 0.87300 0.86791 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.90 8.58 71.98 0.62 -3.28 16 2 C 0.10 2.79 2.66 44.91 0.12 2.90 16 3 H 0.08 2.47 8.13 -2.39 -0.02 2.45 16 4 C 0.07 2.54 4.75 86.30 0.41 2.95 16 5 N -0.68 -31.52 6.48 -517.94 -3.36 -34.88 16 6 C 0.21 11.77 5.44 85.56 0.47 12.24 16 7 C -0.53 -31.82 9.32 25.60 0.24 -31.58 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 10 N -0.94 -58.14 13.29 21.44 0.28 -57.85 16 11 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 12 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 N -0.52 -14.46 3.97 -871.79 -3.46 -17.92 16 16 C 0.02 0.62 8.64 127.69 1.10 1.73 16 17 C 0.00 -0.11 5.03 44.91 0.23 0.12 16 18 C -0.17 -3.61 10.46 30.62 0.32 -3.29 16 19 C -0.16 -3.12 9.73 30.62 0.30 -2.82 16 20 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.07 1.36 6.34 -2.39 -0.02 1.35 16 22 H 0.06 1.29 6.38 -2.38 -0.02 1.28 16 23 H 0.01 0.52 6.70 -2.39 -0.02 0.50 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.34 15.62 7.83 -89.69 -0.70 14.92 16 26 H -0.04 -2.71 8.14 -2.39 -0.02 -2.73 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.05 1.43 6.44 -2.38 -0.02 1.42 16 30 H 0.07 1.78 6.76 -2.39 -0.02 1.76 16 31 H 0.04 0.94 6.28 -2.39 -0.01 0.93 16 32 H 0.10 1.98 6.27 -2.39 -0.02 1.97 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.86 7.26 -2.39 -0.02 1.85 16 Total: -1.00 -65.56 286.18 0.10 -65.46 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.34 Total: 18.12 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.26 Total: -20.57 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -6.53 Total: -110.65 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -65.56 0.10 -65.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.753 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds