Wall clock time and date at job start Sun Mar 29 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47186 * 2 1 4 4 C 1.50701 * 109.46868 * 119.99592 * 2 1 3 5 5 H 1.08008 * 119.99691 * 119.99892 * 4 2 1 6 6 C 1.37874 * 120.00179 * 299.99700 * 4 2 1 7 7 N 1.31508 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47088 * 60.00322 * 8 6 4 10 10 H 1.48500 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47341 * 300.00266 * 8 6 4 12 12 N 1.46897 * 109.47002 * 239.99751 * 2 1 3 13 13 C 1.46897 * 111.00100 * 85.00255 * 12 2 1 14 14 C 1.53003 * 109.47293 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.90690 * 64.29873 * 14 13 12 16 16 C 1.53994 * 109.91846 * 185.40341 * 14 13 12 17 17 C 1.54590 * 105.14312 * 120.77590 * 16 14 13 18 18 C 1.54940 * 102.92203 * 21.95574 * 17 16 14 19 19 N 1.47900 * 110.08046 * 303.09010 * 14 13 12 20 20 C 1.46898 * 111.00131 * 94.70988 * 19 14 13 21 21 H 1.09002 * 109.47106 * 59.99962 * 1 2 3 22 22 H 1.09000 * 109.47660 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47373 * 300.00517 * 1 2 3 24 24 H 0.97005 * 119.99962 * 179.97438 * 7 6 4 25 25 H 1.00900 * 111.00269 * 321.04701 * 12 2 1 26 26 H 1.09004 * 109.47356 * 59.99934 * 13 12 2 27 27 H 1.09002 * 109.47337 * 299.99721 * 13 12 2 28 28 H 1.09005 * 110.30831 * 239.69040 * 16 14 13 29 29 H 1.09000 * 110.30875 * 1.85662 * 16 14 13 30 30 H 1.09004 * 110.72830 * 140.31216 * 17 16 14 31 31 H 1.08997 * 110.72586 * 263.59819 * 17 16 14 32 32 H 1.08998 * 110.66967 * 81.01745 * 18 17 16 33 33 H 1.09004 * 110.66927 * 203.99015 * 18 17 16 34 34 H 1.08999 * 109.46928 * 59.99838 * 20 19 14 35 35 H 1.09003 * 109.47254 * 179.97438 * 20 19 14 36 36 H 1.08994 * 109.47303 * 300.00106 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0196 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 2.5962 -0.5330 -3.5741 15 1 1.8862 -1.3109 -3.8552 16 6 2.7947 0.4448 -4.7471 17 6 4.2912 0.3324 -5.1178 18 6 4.6851 -1.0551 -4.5517 19 7 3.9152 -1.1358 -3.2840 20 6 3.7716 -2.5298 -2.8432 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7082 1.1611 3.4843 25 1 1.4495 -1.4980 -1.4100 26 1 2.7589 1.0461 -2.1182 27 1 1.0871 0.6162 -2.5526 28 1 2.1724 0.1523 -5.5929 29 1 2.5574 1.4621 -4.4358 30 1 4.4238 0.3593 -6.1994 31 1 4.8681 1.1227 -4.6376 32 1 4.3846 -1.8490 -5.2354 33 1 5.7567 -1.1013 -4.3575 34 1 3.2868 -3.1107 -3.6277 35 1 4.7564 -2.9490 -2.6370 36 1 3.1650 -2.5640 -1.9383 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219415333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:53 Heat of formation + Delta-G solvation = 3.220304 kcal Electronic energy + Delta-G solvation = -14698.595850 eV Core-core repulsion = 12410.422567 eV Total energy + Delta-G solvation = -2288.173283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91382 -35.63202 -32.51193 -31.89069 -30.04597 -27.29336 -25.34791 -25.03335 -23.04297 -20.96401 -20.15853 -19.66477 -16.31145 -15.76330 -15.20327 -14.69828 -14.40938 -13.73772 -13.41750 -13.19126 -12.81995 -12.42990 -12.07113 -11.68757 -11.39535 -11.15299 -11.09761 -11.06468 -10.84370 -10.70354 -10.57791 -10.44155 -10.26959 -10.04108 -9.69928 -8.91790 -8.28048 -7.98910 -7.03853 -5.90421 -3.92871 3.39646 3.43055 3.46964 4.30294 4.50556 4.78766 4.88416 5.11955 5.31915 5.41087 5.47758 5.67004 5.71669 5.77084 5.84839 5.92219 6.02561 6.04368 6.18715 6.25017 6.29767 6.56220 6.65965 6.76935 6.90736 7.17982 7.28188 7.46310 7.51536 7.80896 7.97999 8.38331 8.65636 8.73931 9.14300 9.72017 11.16754 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044309 B = 0.007277 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.768949 B = 3846.724395 C = 4192.271087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.490 4.490 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.279 1.279 12 N -0.672 5.672 13 C 0.078 3.922 14 C 0.070 3.930 15 H 0.042 0.958 16 C -0.127 4.127 17 C -0.122 4.122 18 C 0.029 3.971 19 N -0.494 5.494 20 C 0.020 3.980 21 H 0.003 0.997 22 H 0.026 0.974 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.317 0.683 26 H 0.069 0.931 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.011 0.989 35 H 0.059 0.941 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -2.520 -13.567 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.205 1.205 12 N -0.301 5.301 13 C -0.053 4.053 14 C -0.039 4.039 15 H 0.061 0.939 16 C -0.166 4.166 17 C -0.160 4.160 18 C -0.099 4.099 19 N -0.218 5.218 20 C -0.129 4.129 21 H 0.022 0.978 22 H 0.045 0.955 23 H 0.106 0.894 24 H 0.069 0.931 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.149 -2.049 -12.810 13.620 hybrid contribution -1.159 -0.816 0.018 1.418 sum 2.990 -2.865 -12.791 13.445 Atomic orbital electron populations 1.22440 1.01018 0.99002 1.00354 1.19153 0.89255 0.94468 0.86743 0.94972 1.21141 1.29827 1.12279 0.89644 0.92046 1.24948 0.95455 0.95249 0.98987 1.69877 1.37531 1.23332 1.23280 0.86585 0.79199 0.79542 0.82161 1.20313 1.21559 1.20482 1.60789 1.57245 1.08718 1.03394 1.21911 0.97228 0.95913 0.90253 1.22457 0.90846 0.95881 0.94760 0.93949 1.22432 0.96512 1.00384 0.97285 1.22445 0.96134 0.97657 0.99733 1.23279 0.99364 0.96183 0.91056 1.64543 1.13112 1.17486 1.26636 1.22583 1.01841 0.87459 1.00988 0.97771 0.95518 0.89356 0.93143 0.86715 0.91247 0.96550 0.92002 0.90819 0.91675 0.90748 0.94669 0.90496 0.97087 0.92242 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.81 16 2 C 0.21 5.44 2.57 -68.87 -0.18 5.26 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.30 11.32 55.43 0.63 -25.67 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.67 -14.52 4.61 -107.95 -0.50 -15.01 16 13 C 0.08 1.45 4.96 -3.82 -0.02 1.43 16 14 C 0.07 1.07 2.78 -66.64 -0.19 0.89 16 15 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 16 C -0.13 -1.61 6.57 -25.38 -0.17 -1.78 16 17 C -0.12 -1.41 7.06 -24.87 -0.18 -1.59 16 18 C 0.03 0.37 6.56 -1.89 -0.01 0.36 16 19 N -0.49 -7.87 5.08 -230.78 -1.17 -9.04 16 20 C 0.02 0.30 9.23 60.06 0.55 0.86 16 21 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 22 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.32 6.51 7.86 -39.29 -0.31 6.21 16 26 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 27 H 0.02 0.30 7.44 -51.93 -0.39 -0.08 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.42 7.96 -51.93 -0.41 0.01 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.01 0.15 8.00 -51.93 -0.42 -0.27 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.65 6.09 -51.93 -0.32 1.34 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -29.12 281.78 -8.31 -37.43 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.25 Total: 2.23 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.25 Total: -11.11 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -1.04 Total: -49.73 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.12 -8.31 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.651 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds